Sequence Similarity Clusters for the Entities in PDB 1D3B

Entity #1 | Chains: A,C,E,G,I,K
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN SM D3) protein, length: 75 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 15827
95 % 1 1 15096 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.2
PDBFlex
90 % 1 1 15485
70 % 1 1 14540
50 % 1 1 12714
40 % 1 1 11855
30 % 1 1 10815
Entity #2 | Chains: B,D,F,H,J,L
PROTEIN (SMALL NUCLEAR RIBONUCLEOPROTEIN ASSOCIATED PROTEIN B) protein, length: 91 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 4 2424
95 % 1 4 3081 Flexibility: Low
Max RMSD: 2.0, Avg RMSD: 1.1
PDBFlex
90 % 1 4 3092
70 % 1 4 3167
50 % 1 4 3133
40 % 1 4 3116
30 % 1 4 3059

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures