Sequence Similarity Clusters for the Entities in PDB 1D0G

Entity #1 | Chains: R,S,T
DEATH RECEPTOR-5 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 3014
95 % 6 9 3459 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 6 9 3534
70 % 6 9 3508
50 % 6 9 3495
40 % 6 9 3492
30 % 6 9 3413
Entity #2 | Chains: A,B,D
APOPTOSIS-2 LIGAND protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3438
95 % 3 6 4157 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 3 6 4287
70 % 3 6 4208
50 % 3 6 4104
40 % 3 6 4041
30 % 3 6 3951

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1DU3 2 D, E, F, J, K, L TNF-RELATED APOPTOSIS INDUCING LIGAND 9606
2 1D4V 1 B TNF-RELATED APOPTOSIS INDUCING LIGAND SINGLE SUBUNIT 9606
3 1D0G 2 A, B, D APOPTOSIS-2 LIGAND RESIDUES 114-281 9606
4 5CIR 1 A, B, D Tumor necrosis factor ligand superfamily member 10 Residues 114-281 9606
5 1D2Q 1 A, B TNF-RELATED APOPTOSIS INDUCING LIGAND EXTRA CELLULAR DOMAIN 9606
6 4N90 2 A, B, C Tumor necrosis factor ligand superfamily member 10 UNP residues 114-281 9606