Sequence Similarity Clusters for the Entities in PDB 1D0G

Entity #1 | Chains: R,S,T
DEATH RECEPTOR-5 protein, length: 130 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 8 2971
95 % 6 9 3425 Flexibility: Low
Max RMSD: 3.0, Avg RMSD: 1.2
PDBFlex
90 % 6 9 3486
70 % 6 9 3502
50 % 6 9 3453
40 % 6 9 3435
30 % 6 9 3368
Entity #2 | Chains: A,B,D
APOPTOSIS-2 LIGAND protein, length: 168 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 3 6 3404
95 % 3 6 4126 Flexibility: Low
Max RMSD: 3.8, Avg RMSD: 1.3
PDBFlex
90 % 3 6 4181
70 % 3 6 4170
50 % 3 6 4084
40 % 3 6 3999
30 % 3 6 3909

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures