Sequence Similarity Clusters for the Entities in PDB 1CQT

Entity #1 | Chains: M,O
DNA (5'-D(*TP*GP*TP*AP*TP*GP*CP*AP*AP*AP*TP*AP*AP*GP*G)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: N,P
DNA (5'-D(*AP*CP*CP*TP*TP*AP*TP*TP*TP*GP*CP*AP*TP*AP*C)-3') dna, length: 15 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #3 | Chains: A,B
POU DOMAIN, CLASS 2, TRANSCRIPTION FACTOR 1 protein, length: 163 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 34836
95 % 5 6 12193 Flexibility: Low
Max RMSD: 7.1, Avg RMSD: 2.8
PDBFlex
90 % 5 6 12022
70 % 5 6 11442
50 % 9 10 4548
40 % 11 12 2975
30 % 11 12 2938
Entity #4 | Chains: I,J
POU DOMAIN, CLASS 2, ASSOCIATING FACTOR 1 protein, length: 44 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 46105
95 % 1 1 41976 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 1.2
PDBFlex
90 % 1 1 39958
70 % 1 1 35375
50 % 1 1 30711
40 % 1 1 27875
30 % 1 1 24654

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures