Sequence Similarity Clusters for the Entities in PDB 1COV

Entity #1 | Chains: 1
COXSACKIEVIRUS COAT PROTEIN protein, length: 281 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 32571
95 % 2 4 23409 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 4 21402
70 % 4 13 5983
50 % 7 26 850
40 % 71 164 223
30 % 78 203 205
Entity #2 | Chains: 2
COXSACKIEVIRUS COAT PROTEIN protein, length: 263 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30988
95 % 2 4 23048 Flexibility: No
Max RMSD: 0.4, Avg RMSD: 0.4
PDBFlex
90 % 2 4 19540
70 % 7 28 769
50 % 73 201 198
40 % 73 201 211
30 % 78 214 213
Entity #3 | Chains: 3
COXSACKIEVIRUS COAT PROTEIN protein, length: 238 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 32570
95 % 2 4 21962 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.3
PDBFlex
90 % 2 4 21401
70 % 7 28 776
50 % 78 213 177
40 % 78 215 190
30 % 96 256 125
Entity #4 | Chains: 4
COXSACKIEVIRUS COAT PROTEIN protein, length: 68 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 3 30987
95 % 4 8 10269 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.8
PDBFlex
90 % 7 18 4197
70 % 26 77 758
50 % 65 139 431
40 % 65 139 451
30 % 65 139 473

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures