Sequence Similarity Clusters for the Entities in PDB 1CFN

Entity #1 | Chains: A
PROTEIN (IGG2A KAPPA ANTIBODY CB41 (LIGHT CHAIN)) protein, length: 214 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 7 12272
95 % 6 8 10019 Flexibility: Low
Max RMSD: 1.2, Avg RMSD: 0.7
PDBFlex
90 % 23 30 2151
70 % 1880 2352 2
50 % 2342 2983 2
40 % 2342 2983 2
30 % 4748 6055 1
Entity #2 | Chains: B
PROTEIN (IGG2A-KAPPA ANTIBODY CB41 (HEAVY CHAIN)) protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 6 8 11484
95 % 6 8 11586 Flexibility: Low
Max RMSD: 0.9, Avg RMSD: 0.6
PDBFlex
90 % 6 8 11436
70 % 2262 2883 1
50 % 2374 3028 1
40 % 2374 3028 1
30 % 4749 6055 1
Entity #3 | Chains: C
PROTEIN (BOUND PEPTIDE) protein, length: 10 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures