Sequence Similarity Clusters for the Entities in PDB 1CC1

Entity #1 | Chains: S
HYDROGENASE (SMALL SUBUNIT) protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75434
95 % 7 7 6597 Flexibility: No
Max RMSD: 1.0, Avg RMSD: 0.3
PDBFlex
90 % 7 7 6601
70 % 7 7 6500
50 % 15 15 3787
40 % 15 15 3781
30 % 58 68 537
Entity #2 | Chains: L
HYDROGENASE (LARGE SUBUNIT) protein, length: 498 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 75433
95 % 7 7 6596 Flexibility: No
Max RMSD: 0.3, Avg RMSD: 0.2
PDBFlex
90 % 7 7 6600
70 % 7 7 6499
50 % 21 21 2880
40 % 21 21 2882
30 % 21 21 2861

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures