Sequence Similarity Clusters for the Entities in PDB 1C1E

Entity #1 | Chains: L
CATALYTIC ANTIBODY 1E9 (LIGHT CHAIN) protein, length: 216 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 65848
95 % 63 167 171 Flexibility: Low
Max RMSD: 6.3, Avg RMSD: 2.4
PDBFlex
90 % 67 177 157
70 % 676 2439 2
50 % 1752 6281 1
40 % 1752 6281 1
30 % 1767 6327 1
Entity #2 | Chains: H
CATALYTIC ANTIBODY 1E9 (HEAVY CHAIN) protein, length: 219 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 80233
95 % 1 1 51574
90 % 4 9 8422
70 % 839 3009 1
50 % 1753 6281 1
40 % 1753 6281 1
30 % 1768 6327 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures