1BL3

CATALYTIC DOMAIN OF HIV-1 INTEGRASE


Sequence Similarity Clusters for the Entities in PDB 1BL3

Entity #1 | Chains: A,B,C
INTEGRASE protein, length: 160 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 2 5 8511
95 % 137 179 132
90 % 137 179 137
70 % 27 47 922
50 % 27 48 914
40 % 28 51 892
30 % 28 51 933

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

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Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3L3U 1 A, B POL polyprotein CATALYTIC CORE DOMAIN OF integrase, UNP residues 765-927 11676
2 3WNF 1 A, B Gag-Pol polyprotein Catalytic core domain, UNP residue 1203-1359 11676
3 3WNH 1 A, B Gag-Pol polyprotein Catalytic core domain, UNP residue 1203-1359 11676
4 4CF8 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
5 3AVJ 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
6 3AVI 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
7 3AVF 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
8 3ZSQ 1 A, B INTEGRASE INHIBITOR BOUND TO LEDGF BINDING SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
9 3AVG 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
10 3AVA 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
11 3AV9 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
12 5KRT 1 A Integrase unp residues 57-207 11676
13 4AH9 1 A, B INTEGRASE CATALYTIC CORE DOMAIN, RESIDUES 1197-1359 12721 2.7.7.1 | Details
14 4CEZ 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
15 3ZSR 1 A, B INTEGRASE INHIBITOR BOUND TO LEDGF BINDING SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
16 5KRS 1 A Integrase 11676
17 4CEF 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-512 11676 2.7.7.7 | Details
18 4CER 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
19 4CEQ 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
20 4CIG 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
21 3VQ7 1 A, B POL polyprotein integrase core domain, UNP residues 770-927 11676
22 4CIE 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
23 3AVK 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
24 3VQ5 1 A, B POL polyprotein integrase core domain, UNP residues 771-927 11676
25 3ZT2 1 A, B INTEGRASE INHIBITOR BOUND TO THE LEDGF SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
26 4CJU 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
27 5JL4 1 A, B Integrase UNP residues 50-212 11676
28 4CHO 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
29 3ZSO 1 A, B INTEGRASE INHIBITOR BOUND TO THE LEDGF SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
30 3AVC 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
31 4CJT 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
32 4CEC 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
33 4CED 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
34 4CJQ 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
35 4CEB 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
36 3ZSV 1 A, B INTEGRASE INHIBITOR BOUND TO LEDGF BINDING SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
37 4CK1 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
38 4CJ3 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
39 3ZT1 1 A, B INTEGRASE INHIBITOR BOUND TO LEDGF BINDING SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
40 4AHT 1 A, B INTEGRASE N-TERM HIS-TAG NOT REMOVED FROM PROTEIN INTEGRASE, RESIDUES 1197-1359 12721 2.7.7.1 | Details
41 4CJK 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
42 3WNG 1 A, B Gag-Pol polyprotein Catalytic core domain, UNP residue 1203-1359 11676
43 4CGG 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
44 3WNE 1 A, B Gag-Pol polyprotein Catalytic core domain, UNP residue 1203-1359 11676
45 3NF7 1 A, B Integrase catalytic domain, UNP residues 50-212 11676
46 3VQ8 1 A, B POL polyprotein integrase core domain, UNP residues 771-927 11676
47 3ZCM 1 A, B HIV INTEGRASE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
48 3VQE 1 A, B POL polyprotein integrase core domain, UNP residues 771-927 11676
49 4OVL 1 A, B Integrase 11676 2.7.7.1 | Details
50 4CJS 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
51 4CEE 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-512 11676 2.7.7.7 | Details
52 4CIF 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
53 5HRN 1 A Integrase 11676
54 4CJR 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
55 4CEA 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
56 3ZSW 1 A, B INTEGRASE INHIBITOR BOUND TO LEDGF BINDING SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
57 4CGF 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
58 4AHV 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 1197-1359 12721 2.7.7.1 | Details
59 4CHY 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
60 4CGH 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
61 3AVL 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
62 4CHZ 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
63 3AVH 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
64 3AVB 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
65 1EXQ 1 A, B POL POLYPROTEIN HIV-1 INTEGRASE CATALYTIC CORE 11676
66 3AVM 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
67 4CES 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
68 1HYV 1 A INTEGRASE CATALYTIC CORE DOMAIN (RESIDUES 50-212) 11676 2.7.7.49 | Details
69 3AO2 1 A, B POL polyprotein Integrase CATALYTIC CORE DOMAIN, UNP residues 765-927 11676
70 4CK3 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
71 4AHU 1 A, B INTEGRASE N-TERM HIS-TAG NOT REMOVED FROM PROTEIN INTEGRASE RESIDUES 1197-1359 12721 2.7.7.1 | Details
72 1B9D 1 A PROTEIN (INTEGRASE) CATALYTIC CORE DOMAIN 11676 2.7.7.49 | Details
73 4AHS 1 A, B INTEGRASE CATALYTIC CORE DOMAIN, RESIDUES 1197-1359 12721 2.7.7.1 | Details
74 4CJ4 1 A, B HIV INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
75 4CEO 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
76 4OJR 1 A HIV-1 Integrase UNP residues 1209-1371 11676
77 4CJL 1 A INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
78 3NF8 1 A, B Integrase catalytic domain, residues 50-212 11676
79 5HRP 1 A Integrase 11676
80 4LH4 1 A Integrase UNP residues 50-212 11676
81 4CK2 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
82 4CJE 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
83 3NFA 1 A, B Integrase catalytic domain, residues 50-212 11676
84 4CHP 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
85 3VQ6 1 A, B POL polyprotein integrase core domain, UNP residues 770-927 11676
86 3NF9 1 A, B Integrase catalytic domain, residues 50-212 11676
87 3NF6 1 A, B Integrase catalytic domain, residues 50-212 11676
88 1B9F 1 A PROTEIN (INTEGRASE) CATALYTIC CORE DOMAIN 11676 2.7.7.49 | Details
89 3AO3 1 A, B POL polyprotein Integrase CATALYTIC CORE DOMAIN, UNP residues 765-927 11676
90 4CF0 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
91 4CFC 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
92 4CJF 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
93 3ZT3 1 A, B INTEGRASE INHIBITOR BOUND TO THE LEDGF SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
94 5HRS 1 A Integrase 11676
95 4CJW 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
96 5HRR 1 A Integrase 11676
97 4CJ5 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
98 4ID1 1 A Gag-Pol polyprotein 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
99 4CHQ 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
100 4AHR 1 A, B INTEGRASE CATALYTIC CORE DOMAIN, RESIDUES 1197-1359 12721 2.7.7.1 | Details
101 4CFB 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
102 4Y1D 1 A, B Integrase residues 50-212 11676
103 3VQ9 1 A, B, C POL polyprotein integrase core domain, UNP residues 765-925 11676
104 3ZSX 1 A, B INTEGRASE INHIBITOR BOUND TO LEDGF BINDING SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
105 4CJP 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
106 4NYF 1 A, B Integrase Integrase catalytic domain residues 1199-1357 11676 2.7.7 | Details
107 4CF1 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
108 4TSX 1 A Integrase Catalytical core Domain, UNP residues 50-212 11676
109 4CHN 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
110 4CJV 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
111 3VQQ 1 A, B POL polyprotein integrase core domain, UNP residues 770-927 11676
112 3AVN 1 A, B Integrase CCD domain (UNP RESIDUES 1197-1359) 11676
113 3VQ4 1 A, B POL polyprotein Integrase CATALYTIC CORE DOMAIN, UNP residues 770-927 11676
114 2B4J 1 A, B Integrase (IN) HIV-1 integrase 11676
115 3ZSZ 1 A, B INTEGRASE INHIBITOR BOUND TO LEDGF BINDING SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
116 3VQA 1 A, B POL polyprotein integrase core domain, UNP residues 770-927 11676
117 3AO5 1 A, B POL polyprotein Integrase CATALYTIC CORE DOMAIN, UNP residues 765-927 11676
118 1BIS 1 A, B HIV-1 INTEGRASE CORE DOMAIN 11676
119 3LPU 1 A Integrase HIV integrase core domain 11676
120 3ZT0 1 A, B INTEGRASE INHIBITOR BOUND TO THE LEDGF SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
121 3AO1 1 A, B POL polyprotein Integrase CATALYTIC CORE DOMAIN, 765-927 11676
122 3AO4 1 A, B POL polyprotein Integrase CATALYTIC CORE DOMAIN, UNP residues 765-927 11676
123 4CF2 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
124 4CFA 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
125 6NCJ 1 A Integrase 11676
126 3L3V 1 A, B POL polyprotein CATALYTIC CORE DOMAIN OF integrase, UNP residues 765-927 11676
127 4O0J 1 A Integrase 11676
128 1BIZ 1 A, B HIV-1 INTEGRASE CORE DOMAIN, RESIDUES 54 - 212 11676
129 3OVN 1 A, B POL polyprotein Integrase CATALYTIC CORE DOMAIN, 765-927 11676
130 4CGI 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
131 4CE9 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
132 3VQD 1 A, B POL polyprotein integrase core domain, UNP residues 770-927 11676
133 4CF9 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
134 4CGD 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
135 4CGJ 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
136 4E1M 1 A HIV-1 Integrase 11676
137 1BL3 1 A, B, C INTEGRASE CATALYTIC CORE DOMAIN 50 - 212 11676
138 3ZT4 1 A, B INTEGRASE INHIBITOR BOUND TO THE LEDGF SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
139 6L0C 1 A Integrase 11676
140 4JLH 1 A HIV-1 Integrase catalytic core domain 11676
141 5OI2 1 A Integrase Catalytic core domain, UNP Residues 50-212 11676
142 3VQP 1 A, B POL polyprotein integrase core domain, UNP residues 770-927 11676
143 4LH5 1 A Integrase UNP residues 50-212 11676
144 3VQB 1 A, B POL polyprotein integrase core domain, UNP residues 770-927 11676
145 3ZSY 1 A, B INTEGRASE INHIBITOR BOUND TO LEDGF BINDING SITE CORE CATALYTIC DOMAIN, RESIDUES 56-212 12721 2.7.7 | Details
146 5OIA 1 A Pol protein 11676
147 1B92 1 A PROTEIN (INTEGRASE) CATALYTIC CORE DOMAIN 11676 2.7.7.49 | Details
148 6EX9 1 A Integrase 11676
149 4O55 1 A Integrase 11676
150 1QS4 1 A, B, C PROTEIN (HIV-1 INTEGRASE (E.C.2.7.7.49)) Catalytic core domain 11676 2.7.7.49 | Details
151 3LPT 1 A Integrase HIV integrase core domain 11676
152 6JCF 1 A Integrase HIV-1 Integrase catalytic core domain 11676
153 4GVM 1 A Gag-Pol polyprotein UNP residues 1197-1359 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
154 4E1N 1 A HIV-1 integrase 11676
155 6NUJ 1 A Integrase CCD (UNP residues 50-212) 11676
156 4CFD 1 A, B INTEGRASE CATALYTIC DOMAIN, RESIDUES 50-212 11676 2.7.7.7 | Details
157 6VLM 1 A, B Integrase 11676
158 6EB1 1 A Integrase catalytic core domain (UNP residues 50-212) 11676
159 5OI3 1 A Integrase UNP Residues 50-212 11676
160 5OI8 1 A Pol protein 11676
161 4O5B 1 A Integrase 11676
162 5KGW 1 A Integrase 11676
163 1ITG 1 A HIV-1 INTEGRASE 11676
164 6UM8 1 A, B Integrase 11676
165 1BHL 1 A HIV-1 INTEGRASE RESIDUES CAS 65 AND CAS 130 ARE CACODYLATED CYSTEINES CATALYTIC CORE DOMAIN, RESIDUES 50 - 212 11676 2.7.7.49 | Details
166 6JCG 1 A Integrase HIV-1 Integrase catalytic core domain 11676
167 3VQC 1 A, B POL polyprotein integrase core domain, UNP residues 770-927 11676
168 5OI5 1 A Integrase Catalytic core domain, UNP Residues 50-212 11676
169 1BIU 1 A, B, C HIV-1 INTEGRASE CORE DOMAIN 11676
170 1HYZ 1 A INTEGRASE CATALYTIC CORE DOMAIN (RESIDUES 50-212) 11676 2.7.7.49 | Details
171 5EU7 1 A, B Integrase Integrase Central Core Domain Catalytic Core Domain, UNP residues 36-188 11676 2.7.7 | Details
172 6EB2 1 A Integrase catalytic core domain (UNP residues 50-212) 11676
173 4Y1C 1 A, B Integrase residues 50-212 11676
174 2ITG 1 A HUMAN IMMUNODEFICIENCY VIRUS-1 INTEGRASE CATALYTIC CORE DOMAIN 50 - 212 11676
175 5KGX 1 A Integrase 11676
176 4GW6 1 A Gag-Pol polyprotein UNP residues 1197-1359 11676 2.7.7.49 | Details 2.7.7.7 | Details 3.1.13.2 | Details 3.1.26.13 | Details 3.4.23.16 | Details
177 4DMN 1 A HIV-1 Integrase 11676
178 1BI4 1 A, C INTEGRASE CATALYTIC CORE DOMAIN 50 - 212 11676
179 1BI4 2 B INTEGRASE CATALYTIC CORE DOMAIN 50 - 212 11676