Sequence Similarity Clusters for the Entities in PDB 1BGX

Entity #1 | Chains: T
TAQ DNA POLYMERASE protein, length: 832 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 54696
95 % 1 3 26248 Flexibility: High
Max RMSD: 32.7, Avg RMSD: 22.1
PDBFlex
90 % 1 3 25378
70 % 1 3 23123
50 % 1 3 20373
40 % 1 3 18611
30 % 1 3 16694
Entity #2 | Chains: L
TP7 MAB protein, length: 210 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37363
95 % 5 12 3603 Flexibility: Low
Max RMSD: 4.0, Avg RMSD: 1.8
PDBFlex
90 % 28 147 156
70 % 837 2368 2
50 % 1064 3003 2
40 % 1064 3003 2
30 % 2170 6095 1
Entity #3 | Chains: H
TP7 MAB protein, length: 213 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 2 37362
95 % 2 2 30577 Flexibility: Low
Max RMSD: 1.5, Avg RMSD: 1.5
PDBFlex
90 % 2 2 29411
70 % 1032 2903 1
50 % 1093 3048 1
40 % 1093 3048 1
30 % 2171 6095 1

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures