Sequence Similarity Clusters for the Entities in PDB 1AYA

Entity #1 | Chains: A,B
PROTEIN-TYROSINE PHOSPHATASE SYP (N-TERMINAL SH2 DOMAIN) protein, length: 101 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 2 8 8947
95 % 2 8 9931 Flexibility: Low
Max RMSD: 1.3, Avg RMSD: 0.8
PDBFlex
90 % 2 8 9848
70 % 2 8 9549
50 % 2 8 8883
40 % 2 8 8508
30 % 15 39 1572
Entity #2 | Chains: P,Q
PEPTIDE PDGFR-1009 protein, length: 11 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures