Sequence Similarity Clusters for the Entities in PDB 1AVG

Entity #1 | Chains: L
THROMBIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 30297
95 % 1 2 29388 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 2 28300
70 % 25 35 1272
50 % 29 42 1031
40 % 29 42 1076
30 % 29 42 1113
Entity #2 | Chains: H
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 22 1567
95 % 12 22 2043 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 12 22 2085
70 % 329 391 81
50 % 329 391 103
40 % 329 393 121
30 % 1686 1950 6
Entity #3 | Chains: I
TRIABIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 88124
95 % 1 1 60220
90 % 1 1 57741
70 % 1 1 50171
50 % 1 1 42588
40 % 1 1 39067
30 % 1 1 34394

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1UCY 5 K, N THROMBIN 9913 3.4.21.5 | Details
2 1ETR 2 H EPSILON-THROMBIN 9913 3.4.21.5 | Details
3 1BBR 5 K, N EPSILON-THROMBIN 9913 3.4.21.5 | Details
4 1MKX 2 H ALPHA-THROMBIN 9913 3.4.21.5 | Details
5 1ETS 2 H EPSILON-THROMBIN 9913 3.4.21.5 | Details
6 3PMA 2 B, D Thrombin heavy chain 9913 3.4.21.5 | Details
7 1MKW 2 H ALPHA-THROMBIN 9913 3.4.21.5 | Details
8 2ODY 2 B, D Prothrombin (EC 3.4.21.5) Thrombin heavy chain, residues 367-625 9913 3.4.21.5 | Details
9 1ETT 2 H EPSILON-THROMBIN 9913 3.4.21.5 | Details
10 1YCP 2 H ALPHA THROMBIN 9913 3.4.21.5 | Details
11 1HRT 2 H THROMBIN (LARGE SUBUNIT) 9913 3.4.21.5 | Details
12 1AVG 2 H THROMBIN THE C-TERMINAL SEGMENT OF THE L-CHAIN OF ONE THROMBIN MOLECULE IS INSERTED IN THE ACTIVE SITE OF A NEIGHBORING THROMBIN MOLECULE 9913 3.4.21.5 | Details
13 1ID5 2 H THROMBIN THROMBIN HEAVY CHAIN 9913 3.4.21.5 | Details
14 1TBR 2 H, K THROMBIN 9913 3.4.21.5 | Details
15 1UVT 2 H THROMBIN 9913 3.4.21.5 | Details
16 1TBQ 2 H, K THROMBIN 9913 3.4.21.5 | Details
17 1UVU 2 H THROMBIN 9913 3.4.21.5 | Details
18 1VIT 2 H ALPHA THROMBIN 9913 3.4.21.5 | Details
19 1A0H 2 B, E MEIZOTHROMBIN F2/THROMBIN DOMAIN 9913 3.4.21.5 | Details
20 3PMB 2 B, D Thrombin heavy chain 9913 3.4.21.5 | Details
21 1TOC 2 B, D, F, H THROMBIN 9913 3.4.21.5 | Details
22 2A1D 2 B, F thrombin Thrombin heavy chain 9913 3.4.21.5 | Details