Sequence Similarity Clusters for the Entities in PDB 1AVG

Entity #1 | Chains: L
THROMBIN protein, length: 41 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 2 36557
95 % 1 2 30168 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 1.1
PDBFlex
90 % 1 2 29035
70 % 25 35 1253
50 % 29 42 1026
40 % 29 42 1062
30 % 29 42 1110
Entity #2 | Chains: H
THROMBIN protein, length: 259 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 12 22 1567
95 % 12 22 2039 Flexibility: Low
Max RMSD: 2.2, Avg RMSD: 1.1
PDBFlex
90 % 12 22 2086
70 % 329 391 78
50 % 329 391 101
40 % 329 393 121
30 % 1685 1949 6
Entity #3 | Chains: I
TRIABIN protein, length: 142 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 1 87989
95 % 1 1 61168
90 % 1 1 57641
70 % 1 1 50099
50 % 1 1 43184
40 % 1 1 38997
30 % 1 1 34337

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 1AVG 1 L THROMBIN THE C-TERMINAL SEGMENT OF THE L-CHAIN OF ONE THROMBIN MOLECULE IS INSERTED IN THE ACTIVE SITE OF A NEIGHBORING THROMBIN MOLECULE 9913 3.4.21.5 | Details
2 2A1D 1 A, E thrombin Thrombin light chain 9913 3.4.21.5 | Details