Sequence Similarity Clusters for the Entities in PDB 1AOI

Entity #1 | Chains: I,J
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA dna, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
Entity #2 | Chains: A,E
HISTONE H3 protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 1 1 45353
95 % 5 16 1898 Flexibility: Low
Max RMSD: 1.4, Avg RMSD: 0.7
PDBFlex
90 % 5 17 1853
70 % 5 17 1866
50 % 7 19 1621
40 % 7 19 1611
30 % 7 19 1591
Entity #3 | Chains: B,F
HISTONE H4 protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 9 18 1642
95 % 9 18 1924 Flexibility: Low
Max RMSD: 6.6, Avg RMSD: 1.8
PDBFlex
90 % 10 19 1876
70 % 10 19 1916
50 % 10 19 1957
40 % 10 19 1957
30 % 10 19 1852
Entity #4 | Chains: C,G
HISTONE H2A protein, length: 116 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 46 89 168
95 % 84 166 76 Flexibility: Low
Max RMSD: 6.8, Avg RMSD: 0.5
PDBFlex
90 % 88 174 73
70 % 90 180 90
50 % 97 191 110
40 % 97 191 131
30 % 97 191 144
Entity #5 | Chains: D,H
HISTONE H2B protein, length: 99 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 11 2402
95 % 7 17 1380 Flexibility: Low
Max RMSD: 1.9, Avg RMSD: 0.6
PDBFlex
90 % 7 17 1407
70 % 8 18 1285
50 % 8 18 1335
40 % 8 18 1326
30 % 8 18 1321

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures