Sequence Similarity Clusters for the Entities in PDB 1AIK

Entity #1 | Chains: N
HIV-1 GP41 GLYCOPROTEIN protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 2014
95 % 7 13 2324 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 14 2081
70 % 7 14 2102
50 % 7 15 1902
40 % 7 15 1883
30 % 7 15 1822
Entity #2 | Chains: C
HIV-1 GP41 GLYCOPROTEIN protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 17243
95 % 2 5 12281
90 % 3 6 8147
70 % 3 6 8256
50 % 11 23 1574
40 % 11 23 1585
30 % 11 23 1569

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VTP 2 D Transmembrane protein gp41 NHR, UNP RESIDUES 631-666 11676
2 1AIK 2 C HIV-1 GP41 GLYCOPROTEIN N36 AND C34 ARE SYNTHETIC PEPTIDES PROTEASE-RESISTANT CORE 11676
3 2ZZO 2 C Transmembrane protein FUSION INHIBITOR PEPTIDE C34, UNP residues 628-661 11686
4 5BN0 1 C, D Envelope glycoprotein gp160 (ACE) is acetyl modification of the N terminal UNP residues 627-661 11676
5 5BN0 3 A Envelope glycoprotein gp160 UNP residues 627-661 11676