Sequence Similarity Clusters for the Entities in PDB 1AIK

Entity #1 | Chains: N
HIV-1 GP41 GLYCOPROTEIN protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 2124
95 % 7 13 2431 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 14 2177
70 % 7 14 2195
50 % 7 15 1971
40 % 7 15 1955
30 % 7 15 1880
Entity #2 | Chains: C
HIV-1 GP41 GLYCOPROTEIN protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 17935
95 % 2 5 12803
90 % 3 6 8476
70 % 3 6 8562
50 % 11 23 1634
40 % 11 23 1647
30 % 11 23 1618

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VTP 2 D Transmembrane protein gp41 NHR, UNP RESIDUES 631-666 11676
2 1AIK 2 C HIV-1 GP41 GLYCOPROTEIN N36 AND C34 ARE SYNTHETIC PEPTIDES PROTEASE-RESISTANT CORE 11676
3 2ZZO 2 C Transmembrane protein FUSION INHIBITOR PEPTIDE C34, UNP residues 628-661 11686
4 5BN0 1 C, D Envelope glycoprotein gp160 (ACE) is acetyl modification of the N terminal UNP residues 627-661 11676
5 5BN0 3 A Envelope glycoprotein gp160 UNP residues 627-661 11676