Sequence Similarity Clusters for the Entities in PDB 1AIK

Entity #1 | Chains: N
HIV-1 GP41 GLYCOPROTEIN protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 2048
95 % 7 13 2354 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 14 2107
70 % 7 14 2123
50 % 7 15 1926
40 % 7 15 1912
30 % 7 15 1851
Entity #2 | Chains: C
HIV-1 GP41 GLYCOPROTEIN protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 17508
95 % 2 5 12477
90 % 3 6 8280
70 % 3 6 8387
50 % 11 23 1596
40 % 11 23 1608
30 % 11 23 1591

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 3VTQ 1 A, B, E Envelope glycoprotein gp160 gp41, UNP RESIDUES 554-589 11676
2 3AHA 1 A, C, E Transmembrane protein gp41 gp41 fragment N36 11676
3 3VIE 1 A, C, E Envelope glycoprotein gp160 NHR domain, UNP residues 554-589 11676
4 5Z0W 1 E peptide-N 11676
5 5YB3 1 D, E, F Envelope glycoprotein UNP residues 35-70 11676
6 3F4Y 1 A, B, C Envelope glycoprotein gp160 HIV gp41 NHR domain 11708
7 1AIK 1 N HIV-1 GP41 GLYCOPROTEIN N36 AND C34 ARE SYNTHETIC PEPTIDES PROTEASE-RESISTANT CORE 11676
8 2Z2T 1 A, B, C gp41 fragment N36 82834
9 2ZZO 1 N Transmembrane protein GP41 FRAGMENT N36, UNP residues 546-581 11686
10 3O3Z 1 A Envelope glycoprotein gp160 UNP residues 554 to 589 32630
11 3G7A 1 A Envelope glycoprotein gp160 11708
12 3F50 1 A Envelope glycoprotein gp160 UNP RESIDUES 545 TO 580 11708
13 5BN0 2 B, E, N Envelope glycoprotein UNP residues 35-70 11676