Sequence Similarity Clusters for the Entities in PDB 1AIK

Entity #1 | Chains: N
HIV-1 GP41 GLYCOPROTEIN protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 7 13 2104
95 % 7 13 2407 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.4
PDBFlex
90 % 7 14 2157
70 % 7 14 2173
50 % 7 15 1956
40 % 7 15 1943
30 % 7 15 1872
Entity #2 | Chains: C
HIV-1 GP41 GLYCOPROTEIN protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 4 17782
95 % 2 5 12684
90 % 3 6 8414
70 % 3 6 8503
50 % 11 23 1621
40 % 11 23 1636
30 % 11 23 1609

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures