Sequence Similarity Clusters for the Entities in PDB 1AIK

Entity #1 | Chains: N
HIV-1 GP41 GLYCOPROTEIN protein, length: 37 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 9 3098
95 % 5 11 2738 Flexibility: No
Max RMSD: 0.6, Avg RMSD: 0.5
PDBFlex
90 % 5 11 2785
70 % 5 11 2761
50 % 5 12 2345
40 % 5 12 2330
30 % 5 12 2221
Entity #2 | Chains: C
HIV-1 GP41 GLYCOPROTEIN protein, length: 35 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 1 3 24729
95 % 2 5 13582
90 % 3 6 8085
70 % 3 6 7815
50 % 11 22 1556
40 % 11 23 1491
30 % 11 23 1461

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.