Sequence Similarity Clusters for the Entities in PDB 1ABY

Entity #1 | Chains: A
HEMOGLOBIN protein, length: 283 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 4 4 25328
95 % 9 9 9574 Flexibility: Low
Max RMSD: 1.6, Avg RMSD: 0.5
PDBFlex
90 % 9 9 9416
70 % 9 9 9261
50 % 9 9 8577
40 % 9 9 8223
30 % 9 9 7680
Entity #2 | Chains: B,D
HEMOGLOBIN protein, length: 146 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name Structural variation in cluster
100 % 5 5 8387
95 % 203 257 35 Flexibility: Low
Max RMSD: 1.7, Avg RMSD: 0.7
PDBFlex
90 % 207 262 38
70 % 262 353 17
50 % 544 735 7
40 % 544 735 7
30 % 590 783 10

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures