1A43

STRUCTURE OF THE HIV-1 CAPSID PROTEIN DIMERIZATION DOMAIN AT 2.6A RESOLUTION


Sequence Similarity Clusters for the Entities in PDB 1A43

Entity #1 | Chains: A
HIV-1 CAPSID protein, length: 87 (BLAST)
Sequence Similarity Cutoff Rank Chains in Cluster Cluster ID / Name
100 % 5 5 9682
95 % 13 20 1849
90 % 13 20 1892
70 % 13 20 1957
50 % 13 20 2009
40 % 13 20 2042
30 % 13 21 1968

Instructions

In the table for each entity, view a list of similar sequences by selecting the link associated with the percentage cutoff.



View more detailed documentation on the redundancy reduction and sequence clustering procedure used by RCSB PDB.

You can also use the structure comparison tool to compare any 2 given structures


ACTION - (A) Select for download / view details OR (B) Select two chains for comparison
Rank PDB ID Entity ID Chains Description Details Taxonomy EC Number
1 2XT1 1 A GAG POLYPROTEIN C-TERMINAL DOMAIN, RESIDUES 146-231 11676
2 4IPY 1 A, B, C, D Capsid protein p24 C-TERMINAL DOMAIN, RESIDUES 278-363 11676
3 2BUO 1 A HIV-1 CAPSID PROTEIN C-TERMINAL DOMAIN, RESIDUES 278-363 11676
4 3LRY 1 A, B HIV-1 capsid protein C-terminal domain, dimerization domain 11676
5 1A43 1 A HIV-1 CAPSID C-TERMINAL DOMAIN OF HIV-1 CAPSID PROTEIN RESIDUES 146-231 (CAPSID NUMBERING) 11676