PMID- 28594323 OWN - NLM STAT- In-Process LR - 20170611 IS - 2050-084X (Electronic) IS - 2050-084X (Linking) VI - 6 DP - 2017 Jun 8 TI - Epistatic mutations in PUMA BH3 drive an alternate binding mode to potently and selectively inhibit anti-apoptotic Bfl-1. LID - 10.7554/eLife.25541 [doi] LID - e25541 [pii] AB - Overexpression of anti-apoptotic Bcl-2 family proteins contributes to cancer progression and confers resistance to chemotherapy. Small molecules that target Bcl-2 are used in the clinic to treat leukemia, but tight and selective inhibitors are not available for Bcl-2 paralog Bfl-1. Guided by computational analysis, we designed variants of the native BH3 motif PUMA that are > 150-fold selective for Bfl-1 binding. The designed peptides potently trigger disruption of the mitochondrial outer membrane in cells dependent on Bfl-1, but not in cells dependent on other anti-apoptotic homologs. High-resolution crystal structures show that designed peptide FS2 binds Bfl-1 in a shifted geometry, relative to PUMA and other binding partners, due to a set of epistatic mutations. FS2 modified with an electrophile reacts with a cysteine near the peptide-binding groove to augment specificity. Designed Bfl-1 binders provide reagents for cellular profiling and leads for developing enhanced and cell-permeable peptide or small-molecule inhibitors. FAU - Jenson, Justin M AU - Jenson JM AUID- ORCID: http://orcid.org/0000-0003-1960-0447 AD - Department of Biology, Massachusetts Institute of Technology, Cambridge, United States. FAU - Ryan, Jeremy A AU - Ryan JA AUID- ORCID: http://orcid.org/0000-0002-3327-1283 AD - Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States. FAU - Grant, Robert A AU - Grant RA AD - Department of Biology, Massachusetts Institute of Technology, Cambridge, United States. FAU - Letai, Anthony AU - Letai A AD - Department of Medical Oncology, Dana-Farber Cancer Institute, Boston, United States. FAU - Keating, Amy E AU - Keating AE AUID- ORCID: http://orcid.org/0000-0003-4074-8980 AD - Department of Biology, Massachusetts Institute of Technology, Cambridge, United States. AD - Department of Biology, Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, United States. LA - eng PT - Journal Article DEP - 20170608 PL - England TA - Elife JT - eLife JID - 101579614 PMC - PMC5464773 OTO - NOTNLM OT - apoptosis OT - binding specificity OT - biochemistry OT - biophysics OT - human OT - protein-protein interaction OT - structural biology EDAT- 2017/06/09 06:00 MHDA- 2017/06/09 06:00 CRDT- 2017/06/09 06:00 PHST- 2017/01/30 00:00 [received] PHST- 2017/05/16 00:00 [accepted] PHST- 2017/06/09 06:00 [entrez] PHST- 2017/06/09 06:00 [pubmed] PHST- 2017/06/09 06:00 [medline] AID - 10.7554/eLife.25541 [doi] PST - epublish SO - Elife. 2017 Jun 8;6. doi: 10.7554/eLife.25541.