X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 277.0
Details 0.1 M Na/K Phosphate pH 6.0, 0.2 M NaCl, 34% PEG200

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 65.61 α = 90
b = 124.99 β = 90
c = 231.89 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2018-05-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04-1 0.9159 Diamond I04-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.02 110 99.8 0.081 -- -- 6.0 -- 125560 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.02 2.07 98.0 0.969 -- 1.1 4.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.02 85.002 -- 1.34 -- 125215 6231 99.53 -- 0.2197 0.2184 0.2455 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.02 2.0429 -- 182 3882 0.348 0.35 -- 97.0
X Ray Diffraction 2.0429 2.0669 -- 213 3797 0.3327 0.3502 -- 98.0
X Ray Diffraction 2.0669 2.0922 -- 204 3774 0.3203 0.3176 -- 97.0
X Ray Diffraction 2.0922 2.1186 -- 203 3982 0.3008 0.3702 -- 99.0
X Ray Diffraction 2.1186 2.1465 -- 222 3833 0.2848 0.3451 -- 100.0
X Ray Diffraction 2.1465 2.1759 -- 208 3956 0.2779 0.3233 -- 100.0
X Ray Diffraction 2.1759 2.207 -- 173 3962 0.2702 0.3297 -- 100.0
X Ray Diffraction 2.207 2.24 -- 197 3938 0.253 0.3281 -- 99.0
X Ray Diffraction 2.24 2.275 -- 211 3934 0.2459 0.284 -- 99.0
X Ray Diffraction 2.275 2.3123 -- 221 3890 0.2448 0.2863 -- 100.0
X Ray Diffraction 2.3123 2.3521 -- 209 3970 0.2412 0.3061 -- 100.0
X Ray Diffraction 2.3521 2.3949 -- 203 3904 0.2359 0.2672 -- 100.0
X Ray Diffraction 2.3949 2.441 -- 214 3949 0.2386 0.271 -- 100.0
X Ray Diffraction 2.441 2.4908 -- 209 3940 0.2335 0.2834 -- 100.0
X Ray Diffraction 2.4908 2.545 -- 211 3953 0.2291 0.2813 -- 100.0
X Ray Diffraction 2.545 2.6042 -- 206 3959 0.2286 0.2613 -- 100.0
X Ray Diffraction 2.6042 2.6693 -- 205 3960 0.22 0.2642 -- 100.0
X Ray Diffraction 2.6693 2.7415 -- 212 3975 0.2209 0.2498 -- 100.0
X Ray Diffraction 2.7415 2.8222 -- 212 3935 0.2181 0.2689 -- 100.0
X Ray Diffraction 2.8222 2.9132 -- 217 3965 0.2226 0.2532 -- 100.0
X Ray Diffraction 2.9132 3.0174 -- 203 3999 0.2314 0.2723 -- 100.0
X Ray Diffraction 3.0174 3.1382 -- 181 4017 0.2279 0.2487 -- 100.0
X Ray Diffraction 3.1382 3.281 -- 211 4000 0.2199 0.243 -- 100.0
X Ray Diffraction 3.281 3.454 -- 202 4001 0.219 0.2139 -- 100.0
X Ray Diffraction 3.454 3.6704 -- 243 3953 0.2106 0.2662 -- 100.0
X Ray Diffraction 3.6704 3.9538 -- 209 4022 0.1892 0.2287 -- 100.0
X Ray Diffraction 3.9538 4.3517 -- 191 4072 0.1848 0.1911 -- 100.0
X Ray Diffraction 4.3517 4.9813 -- 214 4071 0.1797 0.2018 -- 100.0
X Ray Diffraction 4.9813 6.2756 -- 211 4113 0.2207 0.2486 -- 100.0
X Ray Diffraction 6.2756 85.077 -- 234 4278 0.2048 0.1989 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 17.86
f_plane_restr 0.002
f_bond_d 0.001
f_angle_d 0.341
f_chiral_restr 0.033
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9986
Nucleic Acid Atoms 0
Heterogen Atoms 1
Solvent Atoms 627

Software

Software
Software Name Purpose
PHENIX refinement version: (1.13_2998: ???)
DIALS data reduction
Aimless data scaling
MOLREP phasing