X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 291.15
Details 1M sodium chloride, 30% (w/v) PEG 8000, 100 mM HEPES pH7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 47.77 α = 90
b = 70.03 β = 108.21
c = 65.65 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 80
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2016-05-26
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.2 0.9998 ALS 8.2.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.58 46.57 98.55 0.06087 -- -- 3.5 -- 55518 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.58 1.637 89.19 0.6714 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.58 46.573 -- 1.35 -- 55506 2750 98.55 -- 0.1652 0.1639 0.191 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.58 1.6073 -- 120 2288 0.2748 0.2845 0.0 86.0
X Ray Diffraction 1.6073 1.6365 -- 149 2424 0.2611 0.2681 0.0 92.0
X Ray Diffraction 1.6365 1.668 -- 128 2575 0.2538 0.2787 0.0 96.0
X Ray Diffraction 1.668 1.702 -- 148 2654 0.2335 0.2544 0.0 100.0
X Ray Diffraction 1.702 1.739 -- 147 2667 0.2215 0.2264 0.0 100.0
X Ray Diffraction 1.739 1.7795 -- 128 2666 0.2025 0.2177 0.0 100.0
X Ray Diffraction 1.7795 1.824 -- 122 2672 0.1919 0.2505 0.0 100.0
X Ray Diffraction 1.824 1.8733 -- 140 2652 0.1761 0.1927 0.0 100.0
X Ray Diffraction 1.8733 1.9284 -- 146 2677 0.1722 0.2043 0.0 100.0
X Ray Diffraction 1.9284 1.9907 -- 129 2687 0.1629 0.1716 0.0 100.0
X Ray Diffraction 1.9907 2.0618 -- 136 2652 0.16 0.1999 0.0 100.0
X Ray Diffraction 2.0618 2.1444 -- 149 2634 0.1549 0.1679 0.0 100.0
X Ray Diffraction 2.1444 2.242 -- 163 2647 0.1472 0.1973 0.0 100.0
X Ray Diffraction 2.242 2.3602 -- 141 2679 0.1617 0.1997 0.0 100.0
X Ray Diffraction 2.3602 2.508 -- 132 2698 0.1613 0.197 0.0 100.0
X Ray Diffraction 2.508 2.7017 -- 137 2662 0.1734 0.2035 0.0 100.0
X Ray Diffraction 2.7017 2.9735 -- 120 2710 0.154 0.2033 0.0 100.0
X Ray Diffraction 2.9735 3.4037 -- 157 2667 0.1479 0.1736 0.0 100.0
X Ray Diffraction 3.4037 4.2878 -- 143 2672 0.1331 0.1481 0.0 99.0
X Ray Diffraction 4.2878 46.5 -- 115 2773 0.1551 0.1768 0.0 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 23.0535
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3306
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 541

Software

Software
Software Name Purpose
XSCALE data scaling
PHENIX refinement version: 1.14_3260
PDB_EXTRACT data extraction version: 3.25
XDS data reduction
PHASER phasing