X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.2 M sodium chloride, 20% w/v PEG3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.82 α = 113.08
b = 73.12 β = 100.5
c = 74.44 γ = 108.23
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARMOSAIC 225 mm CCD -- 2017-06-11
Diffraction Radiation
Monochromator Protocol
double crystal Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 22-BM 1 APS 22-BM

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.01 20.03 97.0 -- -- -- 1.0 -- 163130 -- -- 29.33
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.007 2.03 89.5 -- -- -- 3.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.007 20.027 -- 1.73 -- 163130 7888 97.1 -- 0.1734 0.1711 0.2189 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0073 2.03 -- 236 4542 0.2911 0.3428 0.0 85.0
X Ray Diffraction 2.03 2.0539 -- 270 4814 0.285 0.3548 0.0 92.0
X Ray Diffraction 2.0539 2.0789 -- 254 4958 0.2806 0.3202 0.0 92.0
X Ray Diffraction 2.0789 2.1052 -- 232 4856 0.2629 0.3184 0.0 93.0
X Ray Diffraction 2.1052 2.1329 -- 242 5274 0.2565 0.2828 0.0 96.0
X Ray Diffraction 2.1329 2.1621 -- 258 4978 0.2411 0.269 0.0 96.0
X Ray Diffraction 2.1621 2.1929 -- 300 5328 0.2451 0.2559 0.0 97.0
X Ray Diffraction 2.1929 2.2256 -- 274 5038 0.2448 0.3256 0.0 98.0
X Ray Diffraction 2.2256 2.2603 -- 248 5278 0.2402 0.3138 0.0 97.0
X Ray Diffraction 2.2603 2.2973 -- 278 5108 0.2281 0.2828 0.0 98.0
X Ray Diffraction 2.2973 2.3369 -- 240 5228 0.2247 0.3256 0.0 98.0
X Ray Diffraction 2.3369 2.3793 -- 302 5186 0.2241 0.2878 0.0 98.0
X Ray Diffraction 2.3793 2.425 -- 278 5210 0.2093 0.2522 0.0 98.0
X Ray Diffraction 2.425 2.4744 -- 292 5206 0.1958 0.2355 0.0 98.0
X Ray Diffraction 2.4744 2.5281 -- 288 5172 0.1997 0.3145 0.0 98.0
X Ray Diffraction 2.5281 2.5868 -- 250 5210 0.2014 0.235 0.0 98.0
X Ray Diffraction 2.5868 2.6514 -- 230 5274 0.2005 0.265 0.0 98.0
X Ray Diffraction 2.6514 2.7229 -- 238 5264 0.1967 0.2751 0.0 98.0
X Ray Diffraction 2.7229 2.8028 -- 278 5296 0.1866 0.2647 0.0 98.0
X Ray Diffraction 2.8028 2.893 -- 220 5228 0.1798 0.2545 0.0 99.0
X Ray Diffraction 2.893 2.9961 -- 294 5210 0.1781 0.2454 0.0 98.0
X Ray Diffraction 2.9961 3.1156 -- 246 5312 0.169 0.2254 0.0 99.0
X Ray Diffraction 3.1156 3.2569 -- 278 5282 0.1679 0.2085 0.0 99.0
X Ray Diffraction 3.2569 3.4278 -- 258 5232 0.154 0.2119 0.0 99.0
X Ray Diffraction 3.4278 3.6413 -- 276 5306 0.1416 0.1895 0.0 99.0
X Ray Diffraction 3.6413 3.9205 -- 234 5292 0.1355 0.1855 0.0 99.0
X Ray Diffraction 3.9205 4.3115 -- 266 5270 0.1215 0.1428 0.0 99.0
X Ray Diffraction 4.3115 4.9273 -- 258 5320 0.1184 0.1519 0.0 99.0
X Ray Diffraction 4.9273 6.1775 -- 302 5282 0.1404 0.1784 0.0 100.0
X Ray Diffraction 6.1775 20.02 -- 268 5288 0.1376 0.1656 0.0 99.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 42.0352
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.981
f_chiral_restr 0.059
f_dihedral_angle_d 21.443
f_bond_d 0.007
f_plane_restr 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8846
Nucleic Acid Atoms 0
Heterogen Atoms 206
Solvent Atoms 562

Software

Software
Software Name Purpose
PHENIX refinement version: 1.10.1_2155
Aimless data scaling
PDB_EXTRACT data extraction version: 3.25
HKL-2000 data reduction
MOLREP phasing