X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 5.5
Temperature 293.0
Details 100 mM Bis-Tris pH 5.5, 0.2 M ammonium acetate, and 30% PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 169.09 α = 90
b = 43.37 β = 104.18
c = 63.22 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2019-03-28
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 0.9791 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.89 81.97 97.7 0.134 -- -- 3.3 -- 34946 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.89 1.94 87.0 1.302 -- 0.8 3.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.893 81.966 -- 0.31 -- 34881 1704 97.27 -- 0.1907 0.1891 0.2232 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.8928 1.9485 -- 131 2482 0.3261 0.3497 -- 88.0
X Ray Diffraction 1.9485 2.0114 -- 143 2770 0.2882 0.3167 -- 99.0
X Ray Diffraction 2.0114 2.0833 -- 144 2785 0.265 0.3387 -- 98.0
X Ray Diffraction 2.0833 2.1667 -- 135 2763 0.2402 0.2848 -- 98.0
X Ray Diffraction 2.1667 2.2653 -- 153 2742 0.22 0.267 -- 97.0
X Ray Diffraction 2.2653 2.3847 -- 147 2780 0.2026 0.2538 -- 99.0
X Ray Diffraction 2.3847 2.5342 -- 150 2812 0.2075 0.2533 -- 99.0
X Ray Diffraction 2.5342 2.7298 -- 145 2791 0.2049 0.2601 -- 98.0
X Ray Diffraction 2.7298 3.0046 -- 152 2717 0.2039 0.2512 -- 97.0
X Ray Diffraction 3.0046 3.4393 -- 133 2832 0.1893 0.2189 -- 99.0
X Ray Diffraction 3.4393 4.3332 -- 134 2801 0.1461 0.1756 -- 97.0
X Ray Diffraction 4.3332 82.043 -- 137 2902 0.1535 0.1616 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.586
f_chiral_restr 0.041
f_dihedral_angle_d 11.546
f_plane_restr 0.003
f_bond_d 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3762
Nucleic Acid Atoms 0
Heterogen Atoms 1
Solvent Atoms 307

Software

Software
Software Name Purpose
PHENIX refinement version: (1.15.2_3472: ???)
XDS data reduction
Aimless data scaling
PHASER phasing