X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.15
Details Reservoir: 30% PEG 2000 MME, 0.1 M sodium acetate pH 4.6, 0.2 M ammonium sulfate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 52.36 α = 90
b = 64.98 β = 105.81
c = 68 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2018-02-16
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.45 35.51 95.4 -- 0.056 -- 2.8 -- 74084 -- -- 17.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.45 1.48 75.4 -- 0.699 1.1 1.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.451 35.514 -- 0.31 -- 74047 3703 95.36 -- 0.1577 0.1559 0.1911 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.4506 1.4696 -- 108 2040 0.2844 0.3271 -- 73.0
X Ray Diffraction 1.4696 1.4898 -- 124 2374 0.2639 0.2983 -- 84.0
X Ray Diffraction 1.4898 1.5111 -- 135 2564 0.2421 0.3158 -- 91.0
X Ray Diffraction 1.5111 1.5336 -- 140 2637 0.2272 0.2704 -- 95.0
X Ray Diffraction 1.5336 1.5576 -- 141 2698 0.2076 0.2667 -- 95.0
X Ray Diffraction 1.5576 1.5831 -- 139 2624 0.1903 0.2348 -- 93.0
X Ray Diffraction 1.5831 1.6104 -- 143 2725 0.1846 0.2299 -- 97.0
X Ray Diffraction 1.6104 1.6397 -- 147 2801 0.18 0.2007 -- 98.0
X Ray Diffraction 1.6397 1.6712 -- 146 2764 0.1683 0.2101 -- 98.0
X Ray Diffraction 1.6712 1.7053 -- 146 2787 0.1687 0.2404 -- 98.0
X Ray Diffraction 1.7053 1.7424 -- 145 2754 0.1601 0.2084 -- 97.0
X Ray Diffraction 1.7424 1.783 -- 147 2772 0.1518 0.2239 -- 98.0
X Ray Diffraction 1.783 1.8275 -- 143 2745 0.1477 0.1882 -- 98.0
X Ray Diffraction 1.8275 1.8769 -- 143 2694 0.1464 0.1912 -- 95.0
X Ray Diffraction 1.8769 1.9322 -- 147 2800 0.1375 0.1855 -- 98.0
X Ray Diffraction 1.9322 1.9945 -- 146 2783 0.1391 0.2041 -- 99.0
X Ray Diffraction 1.9945 2.0658 -- 147 2785 0.1391 0.1605 -- 99.0
X Ray Diffraction 2.0658 2.1485 -- 147 2803 0.1401 0.1748 -- 99.0
X Ray Diffraction 2.1485 2.2463 -- 148 2787 0.1417 0.191 -- 98.0
X Ray Diffraction 2.2463 2.3647 -- 145 2782 0.1488 0.1838 -- 97.0
X Ray Diffraction 2.3647 2.5128 -- 145 2754 0.1555 0.2121 -- 97.0
X Ray Diffraction 2.5128 2.7068 -- 149 2812 0.1629 0.1773 -- 99.0
X Ray Diffraction 2.7068 2.979 -- 148 2812 0.1567 0.1997 -- 98.0
X Ray Diffraction 2.979 3.4098 -- 143 2718 0.1505 0.1783 -- 95.0
X Ray Diffraction 3.4098 4.2948 -- 145 2758 0.1406 0.1587 -- 96.0
X Ray Diffraction 4.2948 35.5242 -- 146 2771 0.1558 0.1733 -- 95.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 24.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.003
f_chiral_restr 0.064
f_plane_restr 0.004
f_angle_d 0.926
f_dihedral_angle_d 11.192
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3277
Nucleic Acid Atoms 0
Heterogen Atoms 58
Solvent Atoms 471

Software

Software
Software Name Purpose
PHENIX refinement version: 1.9_1692
HKL-2000 data reduction version: 2.3.10
HKL-2000 data scaling version: 2.3.10
PHASER phasing version: 2.7.17