X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
pH 10
Temperature 293.0
Details 0.1 M CAPS, pH 10.5, 20% (w/v) PEG 3350, 0.2 M NaCl

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 41.54 α = 90
b = 103.45 β = 90
c = 144.21 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RAYONIX MX-300 -- 2016-12-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.1 38.55 99.9 0.124 -- -- 7.3 -- 37237 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.1 2.18 -- 1.12 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.1 38.551 -- 1.33 -- 37227 1862 99.95 -- 0.1943 0.1919 0.2417 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1 2.1568 -- 140 2668 0.2654 0.3391 -- 100.0
X Ray Diffraction 2.1568 2.2203 -- 142 2685 0.248 0.2877 -- 100.0
X Ray Diffraction 2.2203 2.2919 -- 141 2666 0.258 0.2898 -- 100.0
X Ray Diffraction 2.2919 2.3738 -- 140 2660 0.238 0.2822 -- 100.0
X Ray Diffraction 2.3738 2.4688 -- 143 2713 0.2315 0.3087 -- 100.0
X Ray Diffraction 2.4688 2.5812 -- 141 2703 0.2201 0.2843 -- 100.0
X Ray Diffraction 2.5812 2.7172 -- 142 2677 0.2084 0.2591 -- 100.0
X Ray Diffraction 2.7172 2.8874 -- 141 2694 0.2146 0.2708 -- 100.0
X Ray Diffraction 2.8874 3.1103 -- 143 2712 0.2163 0.3059 -- 100.0
X Ray Diffraction 3.1103 3.4231 -- 144 2733 0.2005 0.2174 -- 100.0
X Ray Diffraction 3.4231 3.918 -- 144 2739 0.1806 0.2451 -- 100.0
X Ray Diffraction 3.918 4.9347 -- 147 2788 0.1436 0.1829 -- 100.0
X Ray Diffraction 4.9347 38.5578 -- 154 2927 0.1615 0.1936 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.94
f_chiral_restr 0.054
f_bond_d 0.007
f_plane_restr 0.006
f_dihedral_angle_d 17.412
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4201
Nucleic Acid Atoms 0
Heterogen Atoms 67
Solvent Atoms 307

Software

Software
Software Name Purpose
PHENIX refinement version: (1.14_3260: ???)
XPREP data reduction
XDS data scaling
PHENIX phasing