X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 296.0
Details PEG3350 6%, 0.1M Ammonium citrate pH7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 187.48 α = 90
b = 187.48 β = 90
c = 107.29 γ = 120
Symmetry
Space Group P 61 2 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2017-02-07
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 29.84 99.6 -- -- -- 10.8 -- 30804 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.7 29.836 -- 1.36 -- 30801 1543 99.54 -- 0.2208 0.2189 0.2575 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7002 2.7873 -- 129 2625 0.3127 0.3513 -- 100.0
X Ray Diffraction 2.7873 2.8868 -- 139 2616 0.3165 0.3416 -- 100.0
X Ray Diffraction 2.8868 3.0023 -- 141 2628 0.2985 0.3292 -- 100.0
X Ray Diffraction 3.0023 3.1388 -- 132 2635 0.2861 0.3565 -- 100.0
X Ray Diffraction 3.1388 3.3041 -- 142 2614 0.2618 0.2815 -- 100.0
X Ray Diffraction 3.3041 3.5108 -- 128 2646 0.2328 0.2881 -- 100.0
X Ray Diffraction 3.5108 3.7814 -- 134 2663 0.2212 0.2666 -- 100.0
X Ray Diffraction 3.7814 4.161 -- 139 2660 0.1948 0.2004 -- 99.0
X Ray Diffraction 4.161 4.761 -- 164 2637 0.172 0.2226 -- 99.0
X Ray Diffraction 4.761 5.9904 -- 140 2708 0.1883 0.253 -- 99.0
X Ray Diffraction 5.9904 29.8381 -- 155 2826 0.193 0.222 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_dihedral_angle_d 3.524
f_bond_d 0.004
f_angle_d 0.851
f_plane_restr 0.005
f_chiral_restr 0.047
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4966
Nucleic Acid Atoms 0
Heterogen Atoms 63
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (1.13_2998: ???)
MOSFLM data reduction
Aimless data scaling
PHASER phasing