X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 293.0
Details 0.1M Tris pH 8.5, 2.5M ammonium sulfate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 195.78 α = 90
b = 187.58 β = 109.82
c = 107.73 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD NOIR-1 -- 2018-06-16
Diffraction Radiation
Monochromator Protocol
double crystal Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 4.2.2 1.00003 ALS 4.2.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.45 48.58 99.7 -- -- -- 13.8 -- 133433 -- -- 58.17
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.45 2.49 99.9 -- -- -- 12.6 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.45 48.58 -- 1.34 -- 132930 6555 99.35 -- 0.2283 0.227 0.2542 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.45 2.4778 -- 232 3910 0.4215 0.4569 0.0 94.0
X Ray Diffraction 2.4778 2.507 -- 202 4241 0.4188 0.4355 0.0 99.0
X Ray Diffraction 2.507 2.5376 -- 218 4125 0.396 0.3914 0.0 99.0
X Ray Diffraction 2.5376 2.5697 -- 224 4273 0.3703 0.4133 0.0 100.0
X Ray Diffraction 2.5697 2.6035 -- 231 4198 0.341 0.3614 0.0 100.0
X Ray Diffraction 2.6035 2.6392 -- 231 4198 0.3246 0.3551 0.0 100.0
X Ray Diffraction 2.6392 2.6769 -- 207 4201 0.3339 0.3534 0.0 100.0
X Ray Diffraction 2.6769 2.7168 -- 212 4216 0.3333 0.3521 0.0 100.0
X Ray Diffraction 2.7168 2.7593 -- 215 4257 0.3015 0.3326 0.0 100.0
X Ray Diffraction 2.7593 2.8045 -- 230 4186 0.2895 0.3124 0.0 100.0
X Ray Diffraction 2.8045 2.8529 -- 229 4225 0.2867 0.341 0.0 100.0
X Ray Diffraction 2.8529 2.9047 -- 226 4207 0.2939 0.318 0.0 100.0
X Ray Diffraction 2.9047 2.9606 -- 221 4257 0.295 0.3064 0.0 100.0
X Ray Diffraction 2.9606 3.021 -- 199 4220 0.2742 0.3208 0.0 100.0
X Ray Diffraction 3.021 3.0867 -- 212 4251 0.2534 0.2943 0.0 100.0
X Ray Diffraction 3.0867 3.1585 -- 220 4229 0.246 0.2703 0.0 100.0
X Ray Diffraction 3.1585 3.2374 -- 206 4219 0.2345 0.2499 0.0 100.0
X Ray Diffraction 3.2374 3.325 -- 213 4229 0.235 0.2921 0.0 100.0
X Ray Diffraction 3.325 3.4228 -- 230 4218 0.214 0.2329 0.0 100.0
X Ray Diffraction 3.4228 3.5332 -- 228 4202 0.2245 0.2382 0.0 100.0
X Ray Diffraction 3.5332 3.6595 -- 235 4231 0.2191 0.253 0.0 100.0
X Ray Diffraction 3.6595 3.8059 -- 223 4211 0.215 0.2417 0.0 99.0
X Ray Diffraction 3.8059 3.9791 -- 247 4201 0.2047 0.2276 0.0 99.0
X Ray Diffraction 3.9791 4.1887 -- 215 4223 0.1891 0.2113 0.0 99.0
X Ray Diffraction 4.1887 4.451 -- 199 4225 0.1709 0.2052 0.0 99.0
X Ray Diffraction 4.451 4.7944 -- 214 4215 0.1677 0.1985 0.0 100.0
X Ray Diffraction 4.7944 5.2764 -- 207 4263 0.1769 0.1967 0.0 100.0
X Ray Diffraction 5.2764 6.0386 -- 213 4284 0.2065 0.2277 0.0 100.0
X Ray Diffraction 6.0386 7.6033 -- 215 4269 0.231 0.2613 0.0 100.0
X Ray Diffraction 7.6033 48.5912 -- 201 4191 0.213 0.2284 0.0 96.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 84.6909
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_dihedral_angle_d 13.186
f_bond_d 0.006
f_chiral_restr 0.054
f_angle_d 0.899
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11515
Nucleic Acid Atoms 0
Heterogen Atoms 581
Solvent Atoms 171

Software

Software
Software Name Purpose
XDS data reduction
XDS data scaling
PHASER phasing
PHENIX refinement version: 1.11.1_2575
PDB_EXTRACT data extraction version: 3.24