X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.0
Details 0.056M sodium phosphate monobasic, 1.4M potassium phosphate dibasic

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 197.89 α = 90
b = 186.24 β = 110.09
c = 106.96 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD NOIR-1 -- 2018-06-19
Diffraction Radiation
Monochromator Protocol
double crystal Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 4.2.2 1.00003 ALS 4.2.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.85 48.55 99.9 0.274 -- -- 17.6 -- 308174 -- -- 27.3
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.85 1.88 99.9 7.594 -- -- 16.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.85 46.373 -- 1.34 -- 306376 15260 99.33 -- 0.1935 0.1925 0.2123 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.85 1.871 -- 457 8983 0.3747 0.3682 0.0 92.0
X Ray Diffraction 1.871 1.893 -- 473 9197 0.3502 0.3501 0.0 94.0
X Ray Diffraction 1.893 1.9161 -- 492 9620 0.3355 0.3506 0.0 98.0
X Ray Diffraction 1.9161 1.9404 -- 468 9740 0.3045 0.3179 0.0 99.0
X Ray Diffraction 1.9404 1.9659 -- 495 9682 0.283 0.2991 0.0 100.0
X Ray Diffraction 1.9659 1.9928 -- 504 9720 0.271 0.2964 0.0 100.0
X Ray Diffraction 1.9928 2.0213 -- 522 9759 0.2569 0.2822 0.0 100.0
X Ray Diffraction 2.0213 2.0515 -- 510 9746 0.2512 0.271 0.0 100.0
X Ray Diffraction 2.0515 2.0835 -- 504 9760 0.249 0.2605 0.0 100.0
X Ray Diffraction 2.0835 2.1177 -- 527 9754 0.2267 0.2407 0.0 100.0
X Ray Diffraction 2.1177 2.1542 -- 545 9640 0.217 0.248 0.0 100.0
X Ray Diffraction 2.1542 2.1934 -- 533 9772 0.2128 0.2349 0.0 100.0
X Ray Diffraction 2.1934 2.2356 -- 518 9710 0.2097 0.2327 0.0 100.0
X Ray Diffraction 2.2356 2.2812 -- 534 9742 0.2179 0.2384 0.0 100.0
X Ray Diffraction 2.2812 2.3308 -- 490 9750 0.2034 0.2361 0.0 100.0
X Ray Diffraction 2.3308 2.385 -- 513 9786 0.2036 0.2421 0.0 100.0
X Ray Diffraction 2.385 2.4447 -- 551 9658 0.1945 0.2319 0.0 100.0
X Ray Diffraction 2.4447 2.5108 -- 531 9766 0.1978 0.2259 0.0 100.0
X Ray Diffraction 2.5108 2.5846 -- 488 9731 0.1976 0.2217 0.0 100.0
X Ray Diffraction 2.5846 2.6681 -- 504 9785 0.1937 0.2187 0.0 100.0
X Ray Diffraction 2.6681 2.7634 -- 511 9756 0.1994 0.2383 0.0 100.0
X Ray Diffraction 2.7634 2.874 -- 529 9767 0.1954 0.2152 0.0 100.0
X Ray Diffraction 2.874 3.0048 -- 494 9791 0.1879 0.2168 0.0 100.0
X Ray Diffraction 3.0048 3.1632 -- 537 9762 0.1834 0.2123 0.0 100.0
X Ray Diffraction 3.1632 3.3613 -- 558 9708 0.1745 0.1999 0.0 100.0
X Ray Diffraction 3.3613 3.6208 -- 495 9799 0.1626 0.1749 0.0 100.0
X Ray Diffraction 3.6208 3.985 -- 482 9859 0.156 0.1665 0.0 100.0
X Ray Diffraction 3.985 4.5612 -- 515 9800 0.1382 0.1524 0.0 100.0
X Ray Diffraction 4.5612 5.7449 -- 487 9833 0.154 0.1714 0.0 100.0
X Ray Diffraction 5.7449 46.3877 -- 493 9740 0.2054 0.215 0.0 98.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 41.1706
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 11522
Nucleic Acid Atoms 0
Heterogen Atoms 411
Solvent Atoms 1321

Software

Software
Software Name Purpose
PHENIX refinement version: 1.13_2998
XDS data reduction
XDS data scaling
PHASER phasing
PDB_EXTRACT data extraction version: 3.24