X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 277.0
Details 1.8 M Ammonium Sulfate 100 mM Sodium Acetate, pH 5.0 10 mM Lidocaine

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 126.6 α = 90
b = 126.6 β = 90
c = 192.22 γ = 90
Symmetry
Space Group I 4

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315 -- 2015-05-08
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 8.2.1 1.0 ALS 8.2.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3 50 100.0 0.12 -- -- 16.0 -- 30052 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.002 3.109 -- -- -- -- -- 2887

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.002 40.033 -- 1.36 -- 29995 1504 99.48 -- 0.2055 0.2038 0.2372 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.0017 3.0986 -- 126 2476 0.2981 0.3424 -- 96.0
X Ray Diffraction 3.0986 3.2093 -- 146 2606 0.2709 0.3168 -- 100.0
X Ray Diffraction 3.2093 3.3377 -- 137 2567 0.233 0.2511 -- 100.0
X Ray Diffraction 3.3377 3.4895 -- 137 2595 0.1845 0.2125 -- 100.0
X Ray Diffraction 3.4895 3.6734 -- 134 2593 0.1665 0.2118 -- 100.0
X Ray Diffraction 3.6734 3.9034 -- 134 2603 0.1703 0.24 -- 100.0
X Ray Diffraction 3.9034 4.2045 -- 136 2597 0.1593 0.1986 -- 100.0
X Ray Diffraction 4.2045 4.627 -- 141 2616 0.1672 0.2006 -- 100.0
X Ray Diffraction 4.627 5.2952 -- 136 2609 0.1731 0.2036 -- 100.0
X Ray Diffraction 5.2952 6.6664 -- 132 2610 0.2818 0.2937 -- 100.0
X Ray Diffraction 6.6664 40.0367 -- 145 2619 0.2201 0.2457 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.007
f_chiral_restr 0.055
f_dihedral_angle_d 8.372
f_angle_d 0.88
f_plane_restr 0.005
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 3506
Nucleic Acid Atoms 0
Heterogen Atoms 261
Solvent Atoms 39

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
HKL-2000 data reduction
HKL-2000 data scaling
PHENIX phasing