X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 7
Temperature 295.0
Details 1.5M lithium sulfate, 0.1M HEPES pH 7.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 136.9 α = 90
b = 73.34 β = 98.99
c = 175.12 γ = 90
Symmetry
Space Group I 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2017-06-16
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON ALS BEAMLINE 5.0.1 0.97741 ALS 5.0.1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.72 49.3 100.0 0.35 -- -- 6.9 -- 46410 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.72 2.82 100.0 4.509 -- -- 7.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.72 49.303 -- 1.33 -- 46170 1979 99.47 -- 0.24 0.2383 0.2778 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.72 2.788 -- 124 2982 0.3844 0.4236 0.0 94.0
X Ray Diffraction 2.788 2.8634 -- 140 3103 0.3848 0.3932 0.0 99.0
X Ray Diffraction 2.8634 2.9477 -- 143 3167 0.3691 0.4334 0.0 100.0
X Ray Diffraction 2.9477 3.0428 -- 140 3127 0.3529 0.4127 0.0 100.0
X Ray Diffraction 3.0428 3.1515 -- 140 3110 0.317 0.3594 0.0 100.0
X Ray Diffraction 3.1515 3.2777 -- 143 3174 0.2927 0.3536 0.0 100.0
X Ray Diffraction 3.2777 3.4268 -- 141 3151 0.2662 0.2863 0.0 100.0
X Ray Diffraction 3.4268 3.6074 -- 143 3175 0.2329 0.3015 0.0 100.0
X Ray Diffraction 3.6074 3.8334 -- 143 3155 0.2283 0.2739 0.0 100.0
X Ray Diffraction 3.8334 4.1292 -- 143 3180 0.1986 0.2449 0.0 100.0
X Ray Diffraction 4.1292 4.5445 -- 144 3192 0.1675 0.196 0.0 100.0
X Ray Diffraction 4.5445 5.2015 -- 144 3183 0.1804 0.239 0.0 100.0
X Ray Diffraction 5.2015 6.5509 -- 144 3208 0.2206 0.2658 0.0 100.0
X Ray Diffraction 6.5509 49.311 -- 147 3284 0.2216 0.2293 0.0 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 86.6898
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7881
Nucleic Acid Atoms 0
Heterogen Atoms 192
Solvent Atoms 46

Software

Software
Software Name Purpose
XDS data reduction
Aimless data scaling version: 0.5.32
PHASER phasing
PHENIX refinement version: 1.14_3260
PDB_EXTRACT data extraction version: 3.24