X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 293.15
Details .05-.15M sodium acetate 12-24% polyethylene glycol 8000 .05-.15M sodium thiocyanate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 116.62 α = 90
b = 116.62 β = 90
c = 56.62 γ = 120
Symmetry
Space Group P 32 1 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 80
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS EIGER X 16M -- 2018-06-19
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-B 1.033202 APS 23-ID-B

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.34 50.5 99.91 0.0269 -- -- 2.0 -- 18669 -- -- 66.62
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.34 2.424 99.95 0.4022 -- 1.51 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.34 50.5 -- 1.43 -- 18656 1865 99.93 -- 0.2261 0.2217 0.2672 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.34 2.4033 -- 144 1288 0.3917 0.3778 0.0 100.0
X Ray Diffraction 2.4033 2.474 -- 144 1281 0.3692 0.4367 0.0 100.0
X Ray Diffraction 2.474 2.5539 -- 144 1289 0.3473 0.4133 0.0 100.0
X Ray Diffraction 2.5539 2.6452 -- 142 1265 0.302 0.3371 0.0 100.0
X Ray Diffraction 2.6452 2.7511 -- 142 1287 0.2805 0.3153 0.0 100.0
X Ray Diffraction 2.7511 2.8762 -- 139 1278 0.2744 0.3251 0.0 100.0
X Ray Diffraction 2.8762 3.0279 -- 147 1286 0.2652 0.3315 0.0 100.0
X Ray Diffraction 3.0279 3.2175 -- 145 1297 0.2498 0.3112 0.0 100.0
X Ray Diffraction 3.2175 3.4659 -- 139 1274 0.2445 0.2658 0.0 100.0
X Ray Diffraction 3.4659 3.8146 -- 140 1317 0.2257 0.2609 0.0 100.0
X Ray Diffraction 3.8146 4.3663 -- 148 1292 0.1944 0.2353 0.0 100.0
X Ray Diffraction 4.3663 5.5 -- 146 1290 0.1758 0.2061 0.0 100.0
X Ray Diffraction 5.5 50.5114 -- 145 1347 0.1984 0.2726 0.0 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 73.7106
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2252
Nucleic Acid Atoms 0
Heterogen Atoms 28
Solvent Atoms 18

Software

Software
Software Name Purpose
PHENIX refinement version: 1.13_2998
PDB_EXTRACT data extraction version: 3.24
DIALS data reduction
Aimless data scaling
PHASER phasing