X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 291.0
Details 1.0 M lithium chloride, 0.1 M sodium acetate, 30% PEG6000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 50.6 α = 90
b = 57.07 β = 90
c = 110.76 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 80
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2018-08-16
Diffraction Radiation
Monochromator Protocol
Cryo-cooled double crystal Si(111) SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 24-ID-C 0.97910 APS 24-ID-C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.1 46.02 99.7 -- -- -- 9.1 -- 130194 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.1 1.12 97.5 -- 0.298 2.6 8.2 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.1 46.02 -- 1.34 -- 130100 2000 99.65 -- 0.143 0.1428 0.1574 0.02
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.1 1.1275 -- 139 8881 0.1995 0.226 -- 98.0
X Ray Diffraction 1.1275 1.158 -- 141 9018 0.185 0.1932 -- 99.0
X Ray Diffraction 1.158 1.1921 -- 141 9098 0.1756 0.1786 -- 100.0
X Ray Diffraction 1.1921 1.2306 -- 142 9080 0.1618 0.1747 -- 100.0
X Ray Diffraction 1.2306 1.2746 -- 142 9102 0.1595 0.1722 -- 100.0
X Ray Diffraction 1.2746 1.3256 -- 143 9100 0.1556 0.1669 -- 100.0
X Ray Diffraction 1.3256 1.3859 -- 142 9122 0.1524 0.1632 -- 100.0
X Ray Diffraction 1.3859 1.459 -- 142 9109 0.1444 0.1595 -- 100.0
X Ray Diffraction 1.459 1.5504 -- 143 9134 0.139 0.1583 -- 100.0
X Ray Diffraction 1.5504 1.6701 -- 142 9160 0.1329 0.153 -- 100.0
X Ray Diffraction 1.6701 1.8382 -- 144 9181 0.1335 0.1589 -- 100.0
X Ray Diffraction 1.8382 2.1042 -- 144 9226 0.125 0.1363 -- 100.0
X Ray Diffraction 2.1042 2.6511 -- 145 9287 0.1285 0.1412 -- 100.0
X Ray Diffraction 2.6511 46.0627 -- 150 9602 0.1417 0.1552 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.21
f_angle_d 1.421
f_dihedral_angle_d 17.086
f_bond_d 0.011
f_plane_restr 0.01
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2560
Nucleic Acid Atoms 67
Heterogen Atoms 16
Solvent Atoms 537

Software

Software
Software Name Purpose
PHENIX refinement version: (1.13_2998: ???)
XDS data reduction
Aimless data scaling
PHASER phasing