X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Evaporation
Temperature 291.15
Details 0.1M Bis-tris (pH 7.0), 2.0M ammonium phosphate dibasic

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 51.52 α = 90
b = 65.16 β = 90
c = 73.53 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 77
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 300K -- 2017-05-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
ROTATING ANODE RIGAKU FR-X 1.54 -- --

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.92 40.41 97.37 -- -- -- 10.0 -- 18928 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.923 1.991 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.922 40.414 -- 1.34 -- 18916 929 97.25 -- 0.1851 0.1834 0.2178 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9218 2.0231 -- 105 2252 0.2237 0.3177 -- 87.0
X Ray Diffraction 2.0231 2.1499 -- 142 2502 0.2045 0.2189 -- 97.0
X Ray Diffraction 2.1499 2.3159 -- 124 2582 0.1851 0.2181 -- 99.0
X Ray Diffraction 2.3159 2.5489 -- 141 2611 0.1916 0.2365 -- 100.0
X Ray Diffraction 2.5489 2.9176 -- 119 2645 0.1834 0.2489 -- 100.0
X Ray Diffraction 2.9176 3.6755 -- 141 2633 0.1673 0.1823 -- 98.0
X Ray Diffraction 3.6755 40.4231 -- 157 2762 0.1731 0.2031 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 0.581
f_dihedral_angle_d 2.855
f_chiral_restr 0.044
f_plane_restr 0.005
f_bond_d 0.003
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2114
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 238

Software

Software
Software Name Purpose
PHENIX refinement version: (1.13_2998: ???)
HKL-3000 data reduction
HKL-3000 data scaling
PHENIX phasing