X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 292.0
Details 0.2 M ammonium fluoride and 15% (w/v) PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 79.19 α = 90
b = 53.6 β = 107.57
c = 78.54 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2014-05-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 23.52 98.8 0.063 -- -- 3.3 -- 34206 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.7 1.74 94.7 0.539 -- 2.0 2.7 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.7 23.515 -- 1.35 -- 34206 1744 98.64 -- 0.1718 0.1704 0.1972 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.7 1.75 -- 140 2578 0.2558 0.2995 -- 95.0
X Ray Diffraction 1.75 1.8065 -- 133 2663 0.2287 0.2609 -- 98.0
X Ray Diffraction 1.8065 1.871 -- 152 2681 0.2061 0.2371 -- 98.0
X Ray Diffraction 1.871 1.9459 -- 149 2688 0.2007 0.2237 -- 99.0
X Ray Diffraction 1.9459 2.0344 -- 148 2686 0.195 0.2343 -- 99.0
X Ray Diffraction 2.0344 2.1416 -- 134 2728 0.1801 0.2123 -- 99.0
X Ray Diffraction 2.1416 2.2757 -- 149 2700 0.1689 0.2443 -- 99.0
X Ray Diffraction 2.2757 2.4512 -- 134 2737 0.175 0.2203 -- 99.0
X Ray Diffraction 2.4512 2.6976 -- 154 2723 0.1694 0.1913 -- 99.0
X Ray Diffraction 2.6976 3.0872 -- 142 2741 0.1666 0.1873 -- 100.0
X Ray Diffraction 3.0872 3.8867 -- 164 2732 0.1535 0.1797 -- 100.0
X Ray Diffraction 3.8867 23.5176 -- 145 2805 0.1465 0.1521 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_angle_d 0.922
f_dihedral_angle_d 16.167
f_chiral_restr 0.06
f_bond_d 0.007
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2784
Nucleic Acid Atoms 0
Heterogen Atoms 2
Solvent Atoms 222

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2142: ???)
xia2 data reduction
xia2 data scaling
PHASER phasing