X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 292.0
Details 100 mM MES-KOH pH 5.6, 200 mM MgCl2, 8% (w/v) PEG6000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 97.1 α = 90
b = 122.64 β = 90
c = 431.33 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS EIGER X 16M -- 2016-09-10
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X06SA 1.000 SLS X06SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.75 30 100.0 0.173 -- -- 51.9 -- 53796 -- -3.0 163.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.75 3.814 100.0 15.709 -- 0.4 52.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
SAD 3.75 29.99 -- -- -- 42193 2214 82.34 -- 0.22896 0.22732 0.2591 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.75 3.846 -- 78 1269 0.382 0.367 -- 34.83
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 209.67
Anisotropic B[1][1] 8.36
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] -1.5
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -6.87
RMS Deviations
Key Refinement Restraint Deviation
r_scangle_other 8.379
r_dihedral_angle_2_deg 30.114
r_dihedral_angle_1_deg 5.388
r_mcangle_other 8.953
r_gen_planes_other 0.001
r_chiral_restr 0.054
r_dihedral_angle_4_deg 12.332
r_mcangle_it 8.953
r_gen_planes_refined 0.004
r_mcbond_it 5.333
r_scbond_other 4.863
r_angle_other_deg 1.361
r_long_range_B_other 15.972
r_dihedral_angle_3_deg 12.334
r_angle_refined_deg 1.147
r_bond_refined_d 0.006
r_long_range_B_refined 15.972
r_scbond_it 4.863
r_bond_other_d 0.001
r_mcbond_other 5.333
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 20134
Nucleic Acid Atoms 0
Heterogen Atoms 2
Solvent Atoms 2

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0238
DIALS data reduction
Aimless data scaling
PHASER phasing