X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Temperature 293.0
Details PEG5000MME, Mes pH 6.0, 150 mM AMMONIUM SULFATE, 50 mM KCl

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 189.27 α = 90
b = 51.72 β = 121.03
c = 144.14 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2016-09-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SOLEIL BEAMLINE PROXIMA 1 0.97857 SOLEIL PROXIMA 1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.5 49.3 90.0 -- -- -- 3.4 -- 15398 -- -- 46.67
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.5 3.73 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.5 49.28 -- 0.0 -- 7763 738 50.0 -- 0.248 0.245 0.27 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.5 3.91 -- -- 698 0.2439 0.2843 -- 17.72
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 57.48
Anisotropic B[1][1] 7.4087
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 1.6235
Anisotropic B[2][2] -14.5218
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] 7.113
RMS Deviations
Key Refinement Restraint Deviation
t_omega_torsion 2.77
t_angle_deg 1.07
t_bond_d 0.009
t_other_torsion 19.4
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.65
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 8335
Nucleic Acid Atoms 0
Heterogen Atoms 61
Solvent Atoms 0

Software

Software
Software Name Purpose
BUSTER refinement version: 2.10.3
XDS data reduction
STARANISO data scaling
PHASER phasing