X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 291.0
Details 15% PEG 10000, 0.1M TrisHCl pH 8.0, 0.2M CH3COONH4

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 38.19 α = 84.18
b = 38.19 β = 88.55
c = 147.02 γ = 76.96
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 2M -- 2018-02-01
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.07 48.76 94.1 0.194 -- -- 4.343 -- 46288 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.068 2.12 88.7 0.585 -- 1.65 2.966 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.068 24.074 -- 1.98 -- 46227 1706 94.03 -- 0.2014 0.1996 0.2486 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.0681 2.1289 -- 135 3524 0.2795 0.3502 -- 89.0
X Ray Diffraction 2.1289 2.1976 -- 138 3591 0.2557 0.3403 -- 92.0
X Ray Diffraction 2.1976 2.2761 -- 138 3621 0.2646 0.3325 -- 91.0
X Ray Diffraction 2.2761 2.3672 -- 136 3552 0.232 0.276 -- 90.0
X Ray Diffraction 2.3672 2.4748 -- 127 3318 0.2147 0.2742 -- 85.0
X Ray Diffraction 2.4748 2.6051 -- 140 3650 0.2103 0.274 -- 92.0
X Ray Diffraction 2.6051 2.7681 -- 149 3895 0.2122 0.2794 -- 98.0
X Ray Diffraction 2.7681 2.9815 -- 150 3914 0.2106 0.2667 -- 99.0
X Ray Diffraction 2.9815 3.2809 -- 147 3834 0.1979 0.2418 -- 99.0
X Ray Diffraction 3.2809 3.7541 -- 147 3842 0.1781 0.2374 -- 96.0
X Ray Diffraction 3.7541 4.7239 -- 150 3929 0.1648 0.1961 -- 99.0
X Ray Diffraction 4.7239 24.0753 -- 149 3851 0.1882 0.218 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.007
f_chiral_restr 0.056
f_angle_d 0.923
f_plane_restr 0.007
f_dihedral_angle_d 16.65
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 5565
Nucleic Acid Atoms 0
Heterogen Atoms 144
Solvent Atoms 328

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10_2155: ???)
XDS data reduction
XSCALE data scaling
PHASER phasing