X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6
Temperature 293.5
Details 2.4 M Ammonium Sulphate, 0.1 M MES, pH 6

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 48.38 α = 99.33
b = 76.6 β = 99.56
c = 111.15 γ = 93.66
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2016-07-15
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 0.9686 Diamond I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.09 53.91 89.1 0.085 -- -- 1.7 -- 81176 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.09 2.13 47.0 0.472 -- 1.1 1.5 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.1 48.021 -- 1.96 -- 80979 4090 89.76 -- 0.1929 0.191 0.2288 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.1 2.1247 -- 64 1433 0.2963 0.3865 -- 48.0
X Ray Diffraction 2.1247 2.1506 -- 92 1557 0.2703 0.3364 -- 53.0
X Ray Diffraction 2.1506 2.1779 -- 92 1713 0.2666 0.2893 -- 58.0
X Ray Diffraction 2.1779 2.2065 -- 92 1860 0.2748 0.2548 -- 63.0
X Ray Diffraction 2.2065 2.2367 -- 125 2053 0.2682 0.3093 -- 70.0
X Ray Diffraction 2.2367 2.2687 -- 132 2386 0.2707 0.3232 -- 81.0
X Ray Diffraction 2.2687 2.3026 -- 143 2781 0.2582 0.3203 -- 93.0
X Ray Diffraction 2.3026 2.3385 -- 147 2742 0.2452 0.3141 -- 94.0
X Ray Diffraction 2.3385 2.3769 -- 138 2838 0.2299 0.3113 -- 95.0
X Ray Diffraction 2.3769 2.4179 -- 148 2852 0.2367 0.314 -- 96.0
X Ray Diffraction 2.4179 2.4618 -- 144 2820 0.2188 0.2584 -- 96.0
X Ray Diffraction 2.4618 2.5092 -- 150 2855 0.2285 0.2768 -- 97.0
X Ray Diffraction 2.5092 2.5604 -- 149 2897 0.2214 0.2778 -- 97.0
X Ray Diffraction 2.5604 2.616 -- 172 2802 0.2294 0.2557 -- 97.0
X Ray Diffraction 2.616 2.6769 -- 159 2940 0.2245 0.3011 -- 98.0
X Ray Diffraction 2.6769 2.7438 -- 175 2843 0.2179 0.2746 -- 97.0
X Ray Diffraction 2.7438 2.818 -- 166 2851 0.2119 0.2559 -- 97.0
X Ray Diffraction 2.818 2.9009 -- 157 2899 0.201 0.2737 -- 98.0
X Ray Diffraction 2.9009 2.9945 -- 146 2903 0.1998 0.263 -- 98.0
X Ray Diffraction 2.9945 3.1016 -- 141 2870 0.1891 0.2372 -- 98.0
X Ray Diffraction 3.1016 3.2257 -- 152 2963 0.1838 0.2539 -- 98.0
X Ray Diffraction 3.2257 3.3725 -- 149 2858 0.1691 0.2158 -- 98.0
X Ray Diffraction 3.3725 3.5502 -- 162 2884 0.1704 0.1846 -- 98.0
X Ray Diffraction 3.5502 3.7726 -- 143 2887 0.1547 0.2167 -- 97.0
X Ray Diffraction 3.7726 4.0637 -- 155 2893 0.1474 0.1749 -- 98.0
X Ray Diffraction 4.0637 4.4724 -- 170 2852 0.1465 0.166 -- 98.0
X Ray Diffraction 4.4724 5.1189 -- 147 2891 0.1477 0.1704 -- 98.0
X Ray Diffraction 5.1189 6.4469 -- 152 2887 0.1952 0.2033 -- 98.0
X Ray Diffraction 6.4469 48.0333 -- 128 2879 0.1992 0.202 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.002
f_plane_restr 0.003
f_dihedral_angle_d 14.835
f_chiral_restr 0.041
f_angle_d 0.541
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 12548
Nucleic Acid Atoms 0
Heterogen Atoms 61
Solvent Atoms 779

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
MOLREP phasing
Coot model building
xia2 data reduction
xia2 data scaling