X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 4
Temperature 287.0
Details 0.2M Ammonium chloride, 20% PEG 3350, 10uM ZK200775

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 50.47 α = 90
b = 87.65 β = 110.22
c = 68.28 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M-F -- 2016-12-18
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I04 0.97623 Diamond I04

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.98 92.4 100.0 0.064 -- -- 2.0 -- 45174 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.98 2.03 99.8 1.267 -- -- 2.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.34139 51.7259 -- 1.35059 -- 43789 2157 94.6585 -- 0.181218 0.178606 0.230945 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.3414 2.3959 -- 106 2568 0.309818 0.347819 -- 86.036
X Ray Diffraction 2.3959 2.4558 -- 155 2773 0.269908 0.364983 -- 96.0945
X Ray Diffraction 2.4558 2.5222 -- 142 2865 0.261872 0.271149 -- 95.9477
X Ray Diffraction 2.5222 2.5964 -- 162 2727 0.252293 0.305226 -- 95.378
X Ray Diffraction 2.5964 2.6802 -- 155 2772 0.244212 0.363639 -- 93.8442
X Ray Diffraction 2.6802 2.776 -- 111 2692 0.24201 0.290798 -- 90.4485
X Ray Diffraction 2.776 2.8871 -- 161 2762 0.214446 0.265703 -- 96.4686
X Ray Diffraction 2.8871 3.0185 -- 134 2854 0.209246 0.211977 -- 96.139
X Ray Diffraction 3.0185 3.1776 -- 104 2899 0.204563 0.254583 -- 96.7461
X Ray Diffraction 3.1776 3.3767 -- 180 2819 0.172146 0.226948 -- 96.8356
X Ray Diffraction 3.3767 3.6373 -- 144 2664 0.164571 0.239351 -- 92.1865
X Ray Diffraction 3.6373 4.0032 -- 116 2894 0.146656 0.223723 -- 97.5373
X Ray Diffraction 4.0032 4.5822 -- 132 2870 0.126677 0.17867 -- 96.6205
X Ray Diffraction 4.5822 5.7719 -- 164 2694 0.146767 0.170396 -- 93.4903
X Ray Diffraction 5.7719 51.7385 -- 191 2779 0.161353 0.221336 -- 96.2723
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 55.9072
RMS Deviations
Key Refinement Restraint Deviation
f_angle_d 1.26156
f_chiral_restr 0.0628885
f_plane_restr 0.00772229
f_bond_d 0.0134177
f_dihedral_angle_d 14.4997
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4042
Nucleic Acid Atoms 0
Heterogen Atoms 20
Solvent Atoms 104

Software

Software
Software Name Purpose
PHENIX refinement version: 1.11.1_2575
xia2 data reduction
Aimless data scaling version: 0.5.27
PHASER phasing