X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8.5
Temperature 289.0
Details 0.1 M Tris/Bicine pH 8.5, 0.06 M Divalent Cations, 30% PEG550MME/PEG20000

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 72.59 α = 88.43
b = 76.97 β = 64.4
c = 82.64 γ = 75.32
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2017-05-09
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON DIAMOND BEAMLINE I24 0.7500 Diamond I24

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.85 56.01 98.4 -- -- -- 4.3 -- 131017 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.85 1.88 92.9 -- -- 1.5 4.4 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.85 44.387 -- 1.96 -- 130790 2591 98.62 -- 0.199 0.1984 0.228 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.85 1.8837 -- 123 6701 0.3015 0.2773 -- 97.0
X Ray Diffraction 1.8837 1.9199 -- 129 6706 0.2851 0.2883 -- 98.0
X Ray Diffraction 1.9199 1.9591 -- 150 6655 0.2796 0.3211 -- 98.0
X Ray Diffraction 1.9591 2.0017 -- 143 6668 0.2676 0.2655 -- 98.0
X Ray Diffraction 2.0017 2.0482 -- 138 6712 0.2604 0.2754 -- 98.0
X Ray Diffraction 2.0482 2.0995 -- 143 6714 0.2496 0.2739 -- 98.0
X Ray Diffraction 2.0995 2.1562 -- 133 6712 0.2447 0.2762 -- 98.0
X Ray Diffraction 2.1562 2.2197 -- 135 6781 0.24 0.284 -- 98.0
X Ray Diffraction 2.2197 2.2913 -- 129 6736 0.2311 0.273 -- 98.0
X Ray Diffraction 2.2913 2.3732 -- 131 6748 0.2278 0.2737 -- 99.0
X Ray Diffraction 2.3732 2.4682 -- 127 6764 0.2167 0.2961 -- 99.0
X Ray Diffraction 2.4682 2.5805 -- 144 6786 0.2041 0.2586 -- 99.0
X Ray Diffraction 2.5805 2.7166 -- 137 6723 0.2053 0.2735 -- 99.0
X Ray Diffraction 2.7166 2.8867 -- 148 6774 0.2039 0.2266 -- 99.0
X Ray Diffraction 2.8867 3.1096 -- 134 6777 0.1967 0.237 -- 99.0
X Ray Diffraction 3.1096 3.4224 -- 147 6788 0.1869 0.2041 -- 99.0
X Ray Diffraction 3.4224 3.9174 -- 123 6829 0.1687 0.1735 -- 99.0
X Ray Diffraction 3.9174 4.9344 -- 138 6806 0.151 0.1748 -- 99.0
X Ray Diffraction 4.9344 44.3998 -- 139 6819 0.1722 0.2017 -- 100.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_dihedral_angle_d 14.078
f_chiral_restr 0.044
f_angle_d 0.802
f_bond_d 0.006
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 9890
Nucleic Acid Atoms 0
Heterogen Atoms 386
Solvent Atoms 739

Software

Software
Software Name Purpose
PHENIX refinement version: (1.12_2829: ???)
DIALS data reduction
Aimless data scaling
PHASER phasing