X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
Temperature 298.15
Details 0.1 M phosphate citrate pH 4.2, 36% (v/v) PEG 300

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.06 α = 90
b = 93.14 β = 92.93
c = 74.52 γ = 90
Symmetry
Space Group P 1 21 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 193.15
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2017-05-04
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON PETRA III, DESY BEAMLINE P11 2.00 PETRA III, DESY P11

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 74.42 99.93 0.112 -- -- 6.1 -- 68382 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 1.949 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 74.42 -- -- -- 68382 3615 99.93 -- 0.21282 0.21003 0.26732 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.949 -- 287 5011 0.265 0.318 -- 99.92
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 27.173
Anisotropic B[1][1] -0.66
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] -0.08
Anisotropic B[2][2] 1.78
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -1.11
RMS Deviations
Key Refinement Restraint Deviation
r_scbond_it 3.068
r_dihedral_angle_2_deg 36.246
r_mcbond_it 2.612
r_dihedral_angle_3_deg 16.398
r_mcangle_it 3.852
r_gen_planes_other 0.001
r_bond_refined_d 0.017
r_mcangle_other 3.852
r_scbond_other 3.067
r_dihedral_angle_4_deg 17.331
r_long_range_B_refined 6.663
r_angle_refined_deg 1.775
r_scangle_other 4.616
r_dihedral_angle_1_deg 6.247
r_chiral_restr 0.104
r_mcbond_other 2.61
r_angle_other_deg 1.085
r_long_range_B_other 6.453
r_gen_planes_refined 0.009
r_bond_other_d 0.002
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7110
Nucleic Acid Atoms 0
Heterogen Atoms 16
Solvent Atoms 693

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0158
iMOSFLM data reduction
Aimless data scaling
MOLREP phasing