X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 0.1 M Na cacodylat 6.5 pH 25 %w/v PEG 4K

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 51.58 α = 116.76
b = 67.3 β = 89.17
c = 76.61 γ = 105.07
Symmetry
Space Group P 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 6M -- 2014-03-21
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SLS BEAMLINE X10SA 1 SLS X10SA

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.9 44.24 97.6 0.01 0.09 -- 3.42 -- 67823 -- -- 31.03
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.9 2.0 96.2 -- 0.68 -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.9 44.24 -- 0.0 -- 67819 3426 97.6 -- 0.184 0.181 0.223 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.9 1.95 -- 262 4631 0.2269 0.239 -- 96.28
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 35.97
Anisotropic B[1][1] -1.0866
Anisotropic B[1][2] 0.1022
Anisotropic B[1][3] -1.1203
Anisotropic B[2][2] 0.7719
Anisotropic B[2][3] 0.0113
Anisotropic B[3][3] 0.3147
RMS Deviations
Key Refinement Restraint Deviation
t_bond_d 0.01
t_angle_deg 1.11
t_omega_torsion 3.82
t_other_torsion 16.38
Coordinate Error
Parameter Value
Luzzati ESD (Observed) 0.24
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 6659
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 379

Software

Software
Software Name Purpose
BUSTER refinement version: 2.11.7
XDS data reduction
SADABS data scaling
PHASER phasing