X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
pH 6.5
Temperature 295.0
Details 0.2 M NaCl, 0.1 M BisTris, pH 6.5, 25% PEG3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 35.04 α = 90
b = 57.39 β = 103.67
c = 67.99 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 80
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2018-05-11
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON SSRL BEAMLINE BL9-2 0.9795 SSRL BL9-2

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.3 33.03 95.0 0.11 -- -- 6.1 -- 30515 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.3 1.32 96.3 0.71 -- 2.3 -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.3 33.03 -- 1.35 -- 30513 1454 94.79 -- 0.1704 0.1692 0.195 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.3 1.3465 -- 177 2842 0.2955 0.3066 -- 94.0
X Ray Diffraction 1.3465 1.4004 -- 150 2877 0.2702 0.2717 -- 94.0
X Ray Diffraction 1.4004 1.4641 -- 119 2973 0.2484 0.2713 -- 96.0
X Ray Diffraction 1.4641 1.5413 -- 146 2835 0.2164 0.2445 -- 95.0
X Ray Diffraction 1.5413 1.6379 -- 132 2840 0.193 0.2463 -- 93.0
X Ray Diffraction 1.6379 1.7643 -- 131 2996 0.1785 0.2054 -- 97.0
X Ray Diffraction 1.7643 1.9419 -- 153 2862 0.1644 0.1984 -- 94.0
X Ray Diffraction 1.9419 2.2228 -- 143 2941 0.1496 0.1904 -- 96.0
X Ray Diffraction 2.2228 2.8003 -- 156 2898 0.1472 0.1824 -- 94.0
X Ray Diffraction 2.8003 33.0425 -- 147 2995 0.134 0.1433 -- 96.0
RMS Deviations
Key Refinement Restraint Deviation
f_plane_restr 0.006
f_chiral_restr 0.085
f_bond_d 0.008
f_angle_d 0.96
f_dihedral_angle_d 23.933
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 1087
Nucleic Acid Atoms 0
Heterogen Atoms 23
Solvent Atoms 281

Software

Software
Software Name Purpose
PHENIX refinement version: (1.10.1_2155: ???)
MOSFLM data reduction
SCALA data scaling
PHASER phasing