X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion
Details 0.2 M tripotassium citrate with 20 % PEG 3350

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 159.14 α = 90
b = 159.14 β = 90
c = 159.14 γ = 90
Symmetry
Space Group P 43 3 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS3 S 6M -- 2018-03-22
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CLSI BEAMLINE 08ID-1 0.98 CLSI 08ID-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.7 50 100.0 -- -- -- 71.9 -- 19528 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.7 2.8 -- -- -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.7 45.941 -- 1.39 -- 19162 1917 98.19 -- 0.1856 0.1816 0.2215 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.7001 2.7676 -- 102 918 0.2521 0.2859 -- 75.0
X Ray Diffraction 2.7676 2.8424 -- 136 1227 0.2232 0.3108 -- 100.0
X Ray Diffraction 2.8424 2.926 -- 135 1216 0.2227 0.2598 -- 100.0
X Ray Diffraction 2.926 3.0204 -- 136 1232 0.2169 0.2574 -- 100.0
X Ray Diffraction 3.0204 3.1284 -- 138 1230 0.2088 0.2483 -- 100.0
X Ray Diffraction 3.1284 3.2536 -- 138 1240 0.1924 0.2034 -- 100.0
X Ray Diffraction 3.2536 3.4016 -- 136 1232 0.188 0.2668 -- 100.0
X Ray Diffraction 3.4016 3.5809 -- 137 1230 0.1668 0.2101 -- 100.0
X Ray Diffraction 3.5809 3.8052 -- 137 1241 0.1659 0.2077 -- 100.0
X Ray Diffraction 3.8052 4.0988 -- 142 1264 0.1447 0.1889 -- 100.0
X Ray Diffraction 4.0988 4.5109 -- 139 1262 0.1386 0.1647 -- 100.0
X Ray Diffraction 4.5109 5.1629 -- 141 1264 0.1398 0.1612 -- 100.0
X Ray Diffraction 5.1629 6.5018 -- 144 1303 0.1862 0.2296 -- 100.0
X Ray Diffraction 6.5018 45.9473 -- 156 1386 0.2289 0.278 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.004
f_angle_d 0.783
f_dihedral_angle_d 11.128
f_plane_restr 0.004
f_chiral_restr 0.046
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 2594
Nucleic Acid Atoms 0
Heterogen Atoms 145
Solvent Atoms 160

Software

Software
Software Name Purpose
PHENIX refinement version: (1.13_2998)
HKL-2000 data reduction
HKL-2000 data scaling
PHASER phasing