X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 10% PEG 8000, 0.2 M sodium chloride, and 0.1 M HEPES (pH 7.5)

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 71.36 α = 90
b = 147.69 β = 90
c = 183.33 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD ADSC QUANTUM 315r -- 2017-05-05
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.9537 Australian Synchrotron MX1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.1 49.42 100.0 0.2 -- -- 6.8 -- 36031 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.1 3.24 100.0 1.33 -- -- 7.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.1 49.42 -- -- -- 34123 1844 99.95 -- 0.27577 0.274 0.30899 RANDOM
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.1 3.18 -- 127 2446 0.387 0.381 -- 99.96
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 67.784
Anisotropic B[1][1] 3.42
Anisotropic B[1][2] 0.0
Anisotropic B[1][3] 0.0
Anisotropic B[2][2] 2.02
Anisotropic B[2][3] 0.0
Anisotropic B[3][3] -5.44
RMS Deviations
Key Refinement Restraint Deviation
r_gen_planes_other 0.003
r_angle_refined_deg 1.351
r_bond_refined_d 0.011
r_chiral_restr 0.067
r_dihedral_angle_1_deg 4.888
r_dihedral_angle_4_deg 18.318
r_dihedral_angle_3_deg 14.779
r_bond_other_d 0.007
r_gen_planes_refined 0.005
r_angle_other_deg 1.026
r_dihedral_angle_2_deg 34.095
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13158
Nucleic Acid Atoms 0
Heterogen Atoms 0
Solvent Atoms 26

Software

Software
Software Name Purpose
REFMAC refinement version: 5.8.0158
XDS data reduction
Aimless data scaling
PHASER phasing