X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Microbatch
pH 4.6
Temperature 293.0
Details 100 mM sodium acetate trihydrate, 30% (v/v) 2-Methyl-2, 4-pentanediol, 20 mM calcium chloride dihydrate, and 5 mM MnCl2

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 143.13 α = 90
b = 123.12 β = 115.5
c = 90.31 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD MARRESEARCH -- 2014-05-27
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON NSLS BEAMLINE X4C 0.979 NSLS X4C

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.8 49.12 98.9 0.09 -- 24.6 6.1 -- 38433 0.0 0.0 42.0
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.8 2.91 98.2 0.39 -- 5.7 6.1 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.8 49.125 -- 1.34 -- 34390 3450 98.66 -- 0.2251 0.2171 0.2914 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.8 2.8384 -- 150 1220 0.2598 0.3753 -- 98.0
X Ray Diffraction 2.8384 2.8789 -- 150 1229 0.2301 0.3713 -- 98.0
X Ray Diffraction 2.8789 2.9219 -- 120 1219 0.2086 0.306 -- 98.0
X Ray Diffraction 2.9219 2.9675 -- 119 1252 0.2048 0.3383 -- 98.0
X Ray Diffraction 2.9675 3.0162 -- 144 1215 0.2228 0.3669 -- 98.0
X Ray Diffraction 3.0162 3.0682 -- 139 1245 0.2248 0.3466 -- 98.0
X Ray Diffraction 3.0682 3.124 -- 133 1221 0.2289 0.3263 -- 99.0
X Ray Diffraction 3.124 3.184 -- 120 1221 0.2162 0.3175 -- 98.0
X Ray Diffraction 3.184 3.249 -- 137 1274 0.2219 0.3232 -- 99.0
X Ray Diffraction 3.249 3.3196 -- 142 1207 0.1992 0.305 -- 98.0
X Ray Diffraction 3.3196 3.3968 -- 146 1219 0.2103 0.3138 -- 98.0
X Ray Diffraction 3.3968 3.4818 -- 139 1245 0.1996 0.2907 -- 99.0
X Ray Diffraction 3.4818 3.5759 -- 124 1242 0.198 0.2931 -- 99.0
X Ray Diffraction 3.5759 3.6811 -- 138 1217 0.1958 0.26 -- 99.0
X Ray Diffraction 3.6811 3.7998 -- 146 1239 0.1727 0.2617 -- 99.0
X Ray Diffraction 3.7998 3.9356 -- 131 1252 0.1918 0.2711 -- 99.0
X Ray Diffraction 3.9356 4.0931 -- 154 1221 0.1936 0.2662 -- 99.0
X Ray Diffraction 4.0931 4.2793 -- 125 1254 0.1895 0.2632 -- 99.0
X Ray Diffraction 4.2793 4.5048 -- 136 1251 0.1917 0.2602 -- 99.0
X Ray Diffraction 4.5048 4.7868 -- 144 1226 0.1964 0.2683 -- 99.0
X Ray Diffraction 4.7868 5.156 -- 165 1220 0.1994 0.2648 -- 99.0
X Ray Diffraction 5.156 5.6742 -- 132 1266 0.2304 0.3283 -- 99.0
X Ray Diffraction 5.6742 6.4936 -- 153 1239 0.2565 0.3118 -- 99.0
X Ray Diffraction 6.4936 8.1752 -- 138 1268 0.2569 0.3038 -- 99.0
X Ray Diffraction 8.1752 49.1329 -- 125 1278 0.3066 0.312 -- 98.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.051
f_angle_d 1.002
f_dihedral_angle_d 18.768
f_plane_restr 0.006
f_bond_d 0.008
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 7624
Nucleic Acid Atoms 0
Heterogen Atoms 22
Solvent Atoms 173

Software

Software
Software Name Purpose
PHENIX refinement version: (1.12_2829)
HKL-2000 data reduction
HKL-2000 data scaling
COMO phasing