X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 294.0
Details 20% (w/v) PEG3350, 0.2M sodium citrate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 205.96 α = 90
b = 150.86 β = 94.81
c = 134.65 γ = 90
Symmetry
Space Group C 1 2 1

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RAYONIX MX300HE -- 2017-01-14
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
3.2 40 99.8 0.147 -- -- 3.8 -- 67565 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
3.2 3.3 100.0 0.633 -- 1.6 3.8 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 3.2 39.866 -- 1.34 -- 67547 2001 99.88 -- 0.2046 0.2039 0.2267 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 3.2 3.28 -- 152 4642 0.3237 0.3723 -- 100.0
X Ray Diffraction 3.28 3.3687 -- 143 4689 0.3044 0.3279 -- 100.0
X Ray Diffraction 3.3687 3.4677 -- 128 4619 0.2703 0.2962 -- 100.0
X Ray Diffraction 3.4677 3.5796 -- 145 4690 0.2574 0.2845 -- 100.0
X Ray Diffraction 3.5796 3.7074 -- 139 4653 0.2526 0.2689 -- 100.0
X Ray Diffraction 3.7074 3.8558 -- 153 4681 0.2354 0.2587 -- 100.0
X Ray Diffraction 3.8558 4.0311 -- 143 4664 0.2166 0.2587 -- 100.0
X Ray Diffraction 4.0311 4.2434 -- 140 4671 0.1962 0.208 -- 100.0
X Ray Diffraction 4.2434 4.5089 -- 144 4681 0.1662 0.1889 -- 100.0
X Ray Diffraction 4.5089 4.8565 -- 135 4686 0.1527 0.172 -- 100.0
X Ray Diffraction 4.8565 5.3442 -- 149 4686 0.1628 0.1901 -- 100.0
X Ray Diffraction 5.3442 6.1151 -- 144 4716 0.1818 0.2012 -- 100.0
X Ray Diffraction 6.1151 7.6953 -- 143 4694 0.2017 0.2216 -- 100.0
X Ray Diffraction 7.6953 39.8691 -- 143 4774 0.1819 0.1966 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_bond_d 0.002
f_angle_d 0.526
f_plane_restr 0.005
f_chiral_restr 0.044
f_dihedral_angle_d 12.837
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 13369
Nucleic Acid Atoms 0
Heterogen Atoms 240
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (1.13_2998: ???)
XDS data reduction
XDS data scaling
PHENIX phasing