X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Hanging Drop
pH 8
Temperature 277.0
Details 20-25% PEG400 200mM KCl 1mM CdCl 100mM HEPES, pH=8.0

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 67.09 α = 90
b = 119.57 β = 90
c = 127.21 γ = 90
Symmetry
Space Group P 21 21 21

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
PIXEL DECTRIS PILATUS 6M -- 2016-06-21
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON APS BEAMLINE 23-ID-D 1.0332 APS 23-ID-D

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
2.8 15 98.0 -- -- -- 12.8 -- 25670 -- -- --
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
2.8 2.99 -- 0.142 -- -- -- --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 2.8 15.0 -- 1.33 -- 25248 1219 98.35 -- 0.267 0.2649 0.3086 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 2.8 2.9113 -- 123 2329 0.4212 0.4881 -- 88.0
X Ray Diffraction 2.9113 3.0428 -- 135 2649 0.4118 0.4592 -- 99.0
X Ray Diffraction 3.0428 3.2017 -- 134 2688 0.3711 0.4125 -- 100.0
X Ray Diffraction 3.2017 3.4001 -- 146 2672 0.3351 0.3634 -- 100.0
X Ray Diffraction 3.4001 3.6591 -- 113 2711 0.2988 0.3718 -- 100.0
X Ray Diffraction 3.6591 4.0209 -- 169 2670 0.2611 0.3189 -- 100.0
X Ray Diffraction 4.0209 4.588 -- 134 2744 0.2422 0.2975 -- 100.0
X Ray Diffraction 4.588 5.7262 -- 131 2729 0.2482 0.2814 -- 99.0
X Ray Diffraction 5.7262 14.9798 -- 134 2837 0.2408 0.272 -- 99.0
RMS Deviations
Key Refinement Restraint Deviation
f_chiral_restr 0.04
f_plane_restr 0.005
f_dihedral_angle_d 6.9
f_bond_d 0.008
f_angle_d 0.756
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4328
Nucleic Acid Atoms 0
Heterogen Atoms 173
Solvent Atoms 0

Software

Software
Software Name Purpose
PHENIX refinement version: (1.11.1_2575: ???)
Coot model building
Aimless data scaling
PHASER phasing
XDS data processing
XDS data reduction