X-RAY DIFFRACTION Experimental Data & Validation


X-ray Experimental Help

Crystallization

Crystalization Experiments
Method Vapor Diffusion Sitting Drop
Temperature 293.0
Details 1.9 M ammonium sulfate, 0.2 M sodium potassium tartrate

Crystal Data

Unit Cell
Length (Å) Angle (°)
a = 68.91 α = 90
b = 68.91 β = 90
c = 241.37 γ = 90
Symmetry
Space Group P 43 21 2

Diffraction

Diffraction Experiment
ID # Data Collection Temperature
1 100
Diffraction Detector
Detector Diffraction Type Details Collection Date
CCD RAYONIX MX300HE -- 2014-02-12
Diffraction Radiation
Monochromator Protocol
-- SINGLE WAVELENGTH
Diffraction Detector Source
Source Type Wavelength List Synchrotron Site Beamline
SYNCHROTRON CLSI BEAMLINE 08B1-1 0.97948 CLSI 08B1-1

Data Collection

Overall
Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot
1.7 59.85 100.0 0.09076 -- -- 8.0 -- 65095 -- -- 18.06
High Resolution Shell
Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All)
1.701 1.762 100.0 -- -- 2.31 8.0 --

Refinement

Statistics
Structure Solution Method Refinement High Resolution Refinement Low Resolution Cut-off Sigma (I) Cut-off Sigma (F) Number of Reflections (All) Number of Reflections (Observed) Number of Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work R-Free R-Free Selection Details
MOLECULAR REPLACEMENT 1.701 48.727 -- 1.34 -- 65021 3311 99.86 -- 0.1659 0.1645 0.1923 --
High Resolution Shell
Refinement method Shell Resolution (High) Shell Resolution (Low) # of Reflections (Observed) # of Reflections (R-Free) # of Reflections (R-Work) R-Factor (R-Work) R-Factor (R-Free) R-Factor (R-Free Error) Percent Reflections (Observed)
X Ray Diffraction 1.701 1.7253 -- 155 2532 0.2446 0.2505 0.0 100.0
X Ray Diffraction 1.7253 1.7511 -- 138 2489 0.2207 0.2634 0.0 100.0
X Ray Diffraction 1.7511 1.7784 -- 130 2520 0.2064 0.2534 0.0 100.0
X Ray Diffraction 1.7784 1.8076 -- 144 2534 0.2022 0.2073 0.0 100.0
X Ray Diffraction 1.8076 1.8387 -- 103 2540 0.1994 0.2772 0.0 100.0
X Ray Diffraction 1.8387 1.8722 -- 126 2549 0.19 0.2222 0.0 100.0
X Ray Diffraction 1.8722 1.9082 -- 116 2527 0.1869 0.2425 0.0 100.0
X Ray Diffraction 1.9082 1.9471 -- 155 2533 0.182 0.232 0.0 100.0
X Ray Diffraction 1.9471 1.9895 -- 143 2507 0.1843 0.2372 0.0 100.0
X Ray Diffraction 1.9895 2.0358 -- 146 2537 0.1684 0.2215 0.0 100.0
X Ray Diffraction 2.0358 2.0867 -- 151 2532 0.1578 0.1875 0.0 100.0
X Ray Diffraction 2.0867 2.1431 -- 107 2543 0.1592 0.1748 0.0 100.0
X Ray Diffraction 2.1431 2.2062 -- 147 2574 0.1591 0.1903 0.0 100.0
X Ray Diffraction 2.2062 2.2774 -- 131 2538 0.1579 0.1952 0.0 100.0
X Ray Diffraction 2.2774 2.3588 -- 143 2548 0.1616 0.1675 0.0 100.0
X Ray Diffraction 2.3588 2.4532 -- 130 2577 0.1597 0.1999 0.0 100.0
X Ray Diffraction 2.4532 2.5648 -- 153 2579 0.1662 0.2022 0.0 100.0
X Ray Diffraction 2.5648 2.7001 -- 143 2553 0.163 0.2183 0.0 100.0
X Ray Diffraction 2.7001 2.8692 -- 149 2594 0.1725 0.1901 0.0 100.0
X Ray Diffraction 2.8692 3.0907 -- 127 2584 0.1644 0.2089 0.0 100.0
X Ray Diffraction 3.0907 3.4017 -- 139 2619 0.1529 0.1696 0.0 100.0
X Ray Diffraction 3.4017 3.8937 -- 144 2649 0.1402 0.1771 0.0 100.0
X Ray Diffraction 3.8937 4.9049 -- 152 2681 0.134 0.1539 0.0 100.0
X Ray Diffraction 4.9049 48.7467 -- 139 2871 0.183 0.1741 0.0 100.0
Temperature Factor Modeling
Temperature Factor Value
Mean Isotropic B 23.3913
Number of Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms Numbers
Protein Atoms 4148
Nucleic Acid Atoms 0
Heterogen Atoms 91
Solvent Atoms 450

Software

Software
Software Name Purpose
PHENIX refinement version: 1.13_2998
Aimless data scaling
PDB_EXTRACT data extraction version: 3.24
XDS data reduction
PHASER phasing